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WormBase Tree Display for Gene: WBGene00020569

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Name Class

WBGene00020569SMapS_parentSequenceT19D7
IdentityVersion2
NameCGC_namelgc-32Person_evidenceWBPerson2536
WBPerson1430
Sequence_nameT19D7.1
Molecular_nameT19D7.1
T19D7.1.1
CE46889
T19D7.1.2
Other_nameCELE_T19D7.1Accession_evidenceNDBBX284606
Public_namelgc-32
DB_infoDatabaseAceViewgeneXB293
WormQTLgeneWBGene00020569
WormFluxgeneWBGene00020569
NDBlocus_tagCELE_T19D7.1
NCBIgene188603
RefSeqproteinNM_075738.4
TrEMBLUniProtAccQ22588
UniProt_GCRPUniProtAccQ22588
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:03WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
218 Jan 2008 14:49:34WBPerson2970Name_changeCGC_namelgc-32
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlgc
Allele (61)
StrainWBStrain00050951
RNASeq_FPKM (74)
GO_annotation (13)
Ortholog (20)
Paralog (100)
Structured_descriptionConcise_descriptionlgc-32 encodes a highly divergent member of the cys-loop ligand-gated ion channel (LGIC) superfamily; lgc-32(RNAi) animals exhibit reduced fat content and microarray epxeriments indicate that lgc-32 expression is regulated in dauers and during aging.Paper_evidenceWBPaper00005655
WBPaper00024393
WBPaper00031536
WBPaper00032062
Curator_confirmedWBPerson1843
Date_last_updated15 Sep 2010 00:00:00
Automated_descriptionPredicted to enable transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to contribute to chloride channel activity. Predicted to be involved in chloride transmembrane transport. Predicted to be located in neuron projection and synapse.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST19D7.1
Corresponding_CDS_historyT19D7.1:wp225
Corresponding_transcriptT19D7.1.1
T19D7.1.2
Other_sequenceFC541878.1
Oden_isotig21559
Acan_isotig11165
ACC27135_1
Dviv_isotig17062
Dviv_isotig17063
Associated_featureWBsf662425
Experimental_infoRNAi_resultWBRNAi00023607Inferred_automaticallyRNAi_primary
WBRNAi00018853Inferred_automaticallyRNAi_primary
WBRNAi00053542Inferred_automaticallyRNAi_primary
WBRNAi00023833Inferred_automaticallyRNAi_primary
WBRNAi00023321Inferred_automaticallyRNAi_primary
WBRNAi00024121Inferred_automaticallyRNAi_primary
Expr_patternExpr1012138
Expr1157109
Expr2013111
Expr2031343
Microarray_results (19)
Expression_clusterWBPaper00030922:glycosylated_protein
WBPaper00031040:TGF-beta_adult_upregulated
WBPaper00033065:clk-1(qm30)_upregulated
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:dopaminergic-neurons_larva_enriched
WBPaper00037950:dopaminergic-neurons_larva_SelectivelyEnriched
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
WBPaper00044736:oscillating_dev_expression
WBPaper00044786:emr-1(gk119)_upregulated
WBPaper00045390:ubc-9(RNAi)_upregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045774:clk-1_upregulated
WBPaper00045934:wrn-1(gk99)_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_8
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00051021:4-bromodiphenyl-ether_downregulated
WBPaper00051245:cytoplasm_specific
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:epidermis_specific
WBPaper00051265:F4_hrde-1(tm1200)_upregulated
WBPaper00053388:dauer_regulated_Cluster4
WBPaper00053615:SMO-1_target
WBPaper00053814:15C_downregulated_PY79
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Psora_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055482:Tunicamycin_downregulated
WBPaper00055626:pry-1(mu38)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056169:rrf-3(pk1426)_downregulated_L2
WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058711:wdr-5(ok1417)_upregulated
WBPaper00060100:SiNP_downregulated_mRNA
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060445:ikb-1(nr2027)_downregulated_L1
WBPaper00060703:nas-38(ok3407)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061081:E.faecalis_downregulated_N2
WBPaper00061340:CAN
WBPaper00061341:28C_24h_upregulated
WBPaper00061527:sqt-2-dpy-9
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064716:paraquat_downregulated
WBPaper00065032:PAO1_vs_Delt.Pf4-infection_downregulated
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065835:mtH2S-AP39-D0-treatment_upregulated_Day11
WBPaper00065841:2_0
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00026952:class_F
WBPaper00029437:dcr-1_upregulated
WBPaper00029437:rde-4_upregulated
WBPaper00030985:Erwinia_carotovora_downregulated
WBPaper00030985:Photorhabdus_luminescens_downregulated
WBPaper00032062:age_regulated_genes
WBPaper00034757:down_by_oxidative_stress
WBPaper00035873:dpy-9_regulated
WBPaper00036123:Cadmium_regulated
WBPaper00036286:Pattern_D
WBPaper00037695:WC_5-day
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00040821:Au-NP_regulated
WBPaper00040963:Q50_up
WBPaper00040963:Q100_up
WBPaper00040963:Q200_up
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042258:DA1877_upregulated_GravidAdult
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00045015:nhr-25(RNAi)_downregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00047070:N2_UV_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00048989:N2_rapamycin_upregulated
InteractionWBInteraction000266715
WBInteraction000358839
WBInteraction000453612
WBInteraction000551563
WBInteraction000581172
Map_infoMapXPosition-19.5139
PositivePositive_cloneT19D7Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00031536
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene