WormBase Tree Display for Gene: WBGene00009979

WBGene00009979 SMap: S_parent: Sequence: F53F1
  Identity: Version: 2
    Name: CGC_name: cutl-1 Person_evidence: WBPerson52
      Sequence_name: F53F1.1
      Molecular_name: F53F1.1
        F53F1.1.1
        CE47606
      Other_name: CELE_F53F1.1 Accession_evidence: NDB BX284605
      Public_name: cutl-1
    DB_info: Database: AceView gene 5N884
        WormQTL gene WBGene00009979
        WormFlux gene WBGene00009979
        NDB locus_tag CELE_F53F1.1
        Panther gene CAEEL|WormBase=WBGene00009979|UniProtKB=Q9XVM7
          family PTHR22907
        NCBI gene 186168
        RefSeq protein NM_073920.4
        TREEFAM TREEFAM_ID TF315307
        TrEMBL UniProtAcc Q9XVM7
        UniProt_GCRP UniProtAcc Q9XVM7
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 07 May 2008 10:04:34 WBPerson2970 Name_change: CGC_name: cutl-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cutl
    Allele (29)
    RNASeq_FPKM (74)
    GO_annotation: 00102626
    Ortholog (17)
    Paralog (31)
    Structured_description: Automated_description: Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F53F1.1
    Corresponding_CDS_history: F53F1.1:wp188
      F53F1.1:wp227
      F53F1.1:wp231
    Corresponding_transcript: F53F1.1.1
    Other_sequence: PT01957
      BM01590
      HC08770
    Associated_feature: WBsf1001813
      WBsf1001814
      WBsf1001815
      WBsf1001816
      WBsf1020717
      WBsf1020718
      WBsf1020719
      WBsf1020720
  Experimental_info: RNAi_result: WBRNAi00048128 Inferred_automatically: RNAi_primary
      WBRNAi00015512 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022907
      Expr1151938
      Expr2010616
      Expr2028856
    Microarray_results: SMD_F53F1.1
      SMD_F53F1.1:2
      188336_at
      A_12_P114481
      Aff_F53F1.1
      GPL13394_WBGene00009979
      GPL13914_F53F1.1
      GPL14144_F53F1.1_1038-1097_0.937_8_B
      GPL14144_F53F1.1_792-851_0.922_18_C
      GPL14144_F53F1.1_898-957_0.955_2_A
      GPL19516_CGZ0011473
      GPL19516_CGZ0023449
      GPL21109_Cat_F53F1.1
      GPL21109_F53F1.1
      GPL21109_F53F1.12
      GPL3518_CE10932
      GPL8304_CE_WBGene00009979_A
      GPL8673_F53F1_1P00026
      GPL8673_F53F1_1P00484
      GPL8673_F53F1_1P00864
      GPL9450_F53F1.1
      cea2.i.39714
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00045050:csr-1(hypomorph)_upregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:body-muscle_enriched
      WBPaper00050990:body-muscle_expressed
      WBPaper00055226:adr-1(tm668)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00057068:numr-1(RNAi)_downregulated
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:Neuroblast_AIZ_FLP_RMG
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061527:176662_at-Y53F4B.16
      WBPaper00061613:human-amyloid-beta_upregulated
      WBPaper00061636:atracurium_upregulated
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00065029:cadmium_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_21
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:Resveratrol_regulated_N2
      WBPaper00026980:intestine_enriched
      WBPaper00030985:Enterococcus_faecalis_downregulated
      WBPaper00030985:Erwinia_carotovora_upregulated
      WBPaper00030985:Photorhabdus_luminescens_downregulated
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_reproductive
    Interaction: WBInteraction000370383
  Map_info: Map: V Position: 5.25536 Error: 0.005791
    Positive: Positive_clone: F53F1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene