WormBase Tree Display for Gene: WBGene00008067

WBGene00008067 SMap: S_parent: Sequence: C43D7
  Identity: Version: 1
    Name: Sequence_name: C43D7.4
      Molecular_name (3)
      Other_name: CELE_C43D7.4 Accession_evidence: NDB BX284605
      Public_name: C43D7.4
    DB_info: Database: AceView gene 5T794
        WormQTL gene WBGene00008067
        WormFlux gene WBGene00008067
        NDB locus_tag CELE_C43D7.4
        NCBI gene 183409
        RefSeq protein NM_075364.1
        TREEFAM TREEFAM_ID TF322233
        TrEMBL UniProtAcc Q9XVC1
        UniProt_GCRP UniProtAcc Q9XVC1
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (28)
    RNASeq_FPKM (74)
    Ortholog: chrV_pilon.g17870 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00008068 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00050900 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
    Structured_description: Automated_description: Enriched in neuronal sheath cell based on single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by seven chemicals including Mercuric Chloride; Rifampin; and allantoin based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C43D7.4
    Corresponding_transcript: C43D7.4.1
    Associated_feature: WBsf669861
      WBsf1003214
      WBsf1003215
  Experimental_info: RNAi_result: WBRNAi00019949 Inferred_automatically: RNAi_primary
      WBRNAi00042373 Inferred_automatically: RNAi_primary
      WBRNAi00011883 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013375
      Expr1033502
      Expr1146360
      Expr2001595
      Expr2019819
    Drives_construct: WBCnstr00033261
    Construct_product: WBCnstr00033261
    Microarray_results: SMD_C43D7.4
      SMD_Y116F11A.H
      177638_at
      A_12_P103265
      A_12_P109248
      A_12_P140285
      A_12_P140286
      Aff_C43D7.4
      GPL14144_C43D7.4_355-414_0.948_1_A
      GPL19516_CGZ0008650
      GPL19516_CGZ0008651
      GPL21109_C43D7.4
      GPL3518_CE18548
      GPL8304_CE_WBGene00008067_A
      GPL8673_C43D7_4P00142
      GPL8673_C43D7_4P00355
      GPL8673_C43D7_4P00362
      GPL9450_C43D7.4
      cea2.i.34430
    Expression_cluster: WBPaper00032425:up_in_lin-35
      WBPaper00032528:L3_depleted
      WBPaper00037624:ets-4(ok165)_downregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00038168:lin-35_upregulated
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00042194:nhr-114(RNAi)_downregulated
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00044316:HgCl2_20uM_upregulated
      WBPaper00045257:bar-1(ga80)_upregulated
      WBPaper00045401:N.parisii_8h_upregulated
      WBPaper00045401:N.parisii_16h_upregulated
      WBPaper00045401:N.parisii_30h_upregulated
      WBPaper00049736:15deg-then-25deg(12hr)_upregulated_N2
      WBPaper00049736:daf-2(e1370)_downregulated_15deg-then-25deg(12hr)
      WBPaper00050096:P.aeruginosa_downregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00051137:N.parisii-virus_upregulated_N2
      WBPaper00051137:Orsay-virus_upregulated_N2
      WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
      WBPaper00053020:OrsayVirus-infection_upregulated
      WBPaper00053020:OrsayVirus-infection_upregulated_microarray
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055386:daf-2(e1370)_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056034:pals-25(jy9)_upregulated
      WBPaper00056471:flcn-1(ok975)_upregulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00059426:SiO2-nanoparticles_downregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00061319:pnp-1(jy90)_upregulated
      WBPaper00061319:pnp-1(jy121)_upregulated
      WBPaper00061340:ILsh_OLLsh_OLQsh
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061527:C17H1.6-C17H1.13
      WBPaper00061530:nhr-49(e2144)_upregulated
      WBPaper00062056:lin-15B(n744)_upregulated
      WBPaper00062056:lin-37(n758)_upregulated
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00062497:xpf-1(tm2842)_downregulated
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00062587:lsl-1(ljm1)_downregulated
      WBPaper00062587:lsl-1(tm4769)_downregulated
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00065086:N2_N.ausubeli_regulated
      WBPaper00065086:N2_N.ferruginous_regulated
      WBPaper00065086:N2_N.ironsii_regulated
      WBPaper00065086:N2_N.parisii_regulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_25C
      WBPaper00065288:mdt-15(tm2182)_upregulated
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00066204:CdCl2_upregulated_mRNA
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4489_group_2
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00035227:heat_shock_regulated
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00040184:hcf-1down_sir-2.1down_daf-2down
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041609:hpl-1_hpl-2_upregulated
      WBPaper00042574:N2_OrsayVirus_upregulated
      WBPaper00042574:rde-1(ne219)_OrsayVirus_upregulated
      WBPaper00045401:N.parisii_34h_upregulated_N2
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc6390]:male_sex-enriched
    Interaction (95)
  Map_info: Positive: Positive_clone: C43D7 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 21.2908
  Reference: WBPaper00062345
  Method: Gene