WormBase Tree Display for Gene: WBGene00017830

WBGene00017830 SMap: S_parent: Sequence: F26F4
  Identity: Version: 2
    Name: CGC_name: rpb-8 Person_evidence: WBPerson1787
      Sequence_name: F26F4.11
      Molecular_name: F26F4.11
        F26F4.11.1
        CE04448
      Other_name: CELE_F26F4.11 Accession_evidence: NDB BX284603
      Public_name: rpb-8
    DB_info: Database: AceView gene 3G6
        WormQTL gene WBGene00017830
        WormFlux gene WBGene00017830
        NDB locus_tag CELE_F26F4.11
        Panther gene CAEEL|WormBase=WBGene00017830|UniProtKB=Q19826
          family PTHR10917
        NCBI gene 175660
        RefSeq protein NM_065635.5
        SwissProt UniProtAcc Q19826
        TREEFAM TREEFAM_ID TF103043
        UniProt_GCRP UniProtAcc Q19826
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 04 Oct 2007 14:17:58 WBPerson2970 Name_change: CGC_name: rpb-8
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpb
    Allele: WBVar02156492
      WBVar01494586
      WBVar00396910
      WBVar00396911
      WBVar00824640
      WBVar00824641
    Strain: WBStrain00051264
    RNASeq_FPKM (74)
    GO_annotation (18)
    Contained_in_operon: CEOP3895
    Ortholog (33)
    Structured_description: Automated_description: Predicted to enable DNA binding activity and DNA-directed 5'-3' RNA polymerase activity. Predicted to contribute to RNA polymerase I activity; RNA polymerase II activity; and RNA polymerase III activity. Predicted to be involved in transcription by RNA polymerase I; transcription by RNA polymerase II; and transcription by RNA polymerase III. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Is an ortholog of human POLR2H (RNA polymerase II, I and III subunit H). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F26F4.11
    Corresponding_transcript: F26F4.11.1
    Other_sequence (55)
    Associated_feature: WBsf651017
      WBsf226606
  Experimental_info: RNAi_result (30)
    Expr_pattern: Expr1014365
      Expr1037663
      Expr1149583
      Expr2015428
      Expr2033663
    Drives_construct: WBCnstr00026981
    Construct_product: WBCnstr00026981
    Microarray_results (18)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032097:CGH-1-associated-mRNA
      WBPaper00032528:L3_enriched
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00041072:UTX-1_interacting_protein
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045420:fertilization_downregulated_protein
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045774:clk-1_downregulated
      WBPaper00045861:wdr-5(ok1417)_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048988:neuron_expressed
      WBPaper00049018:swsn-2.2(RNAi)_upregulated
      WBPaper00049217:DAF-16_downregulated
      WBPaper00049498:npr-1(ur89)_regulated_6
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050225:flp-6(RNAi)_downregulated
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050686:glp-1(e2141)_downregulated
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:epidermis_nucleus_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_nucleus_expressed
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053388:dauer_regulated_Cluster6
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055049:S.gordonii_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055482:pmt-2(RNAi)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061527:snr-3-rbx-1
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064156:lbp-3(overexpress)_downregulated
      WBPaper00064494:postdauer_downregulated_AWA
      WBPaper00064716:paraquat_upregulated
      WBPaper00065199:Transgeneration-starvation_regulated_fed
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065945:epidermis-rpoa-2(-)_downregulated_protein
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066038:mip-1(how5)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_4
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00031532:Larva_Pan_Neuronal_Depleted
      WBPaper00032165:differentially_expressed_with_age_medoid_5
      WBPaper00032948:FedUp
      WBPaper00036286:Pattern_F
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00038231:Cry5B_2-fold_downregulated
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00042128:gei-8(ok1671)_downregulated
      WBPaper00048989:N2_allantoin_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_66
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(66_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(23_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:oogenesis-enriched
    Interaction: WBInteraction000006687
      WBInteraction000006977
      WBInteraction000007232
      WBInteraction000028296
      WBInteraction000034627
      WBInteraction000035413
      WBInteraction000036616
      WBInteraction000037752
      WBInteraction000040087
      WBInteraction000044527
      WBInteraction000049572
      WBInteraction000101284
      WBInteraction000102386
      WBInteraction000103261
      WBInteraction000103283
      WBInteraction000104048
      WBInteraction000104616
      WBInteraction000105362
      WBInteraction000105994
      WBInteraction000106388
      WBInteraction000106392
      WBInteraction000106393
      WBInteraction000106915
      WBInteraction000106924
      WBInteraction000106968
      WBInteraction000108766
      WBInteraction000109726
      WBInteraction000109730
      WBInteraction000109731
      WBInteraction000109732
      WBInteraction000111409
      WBInteraction000119116
      WBInteraction000122461
      WBInteraction000123715
      WBInteraction000128345
      WBInteraction000128697
      WBInteraction000128814
      WBInteraction000130175
      WBInteraction000130220
      WBInteraction000130276
      WBInteraction000130366
      WBInteraction000130560
      WBInteraction000130685
      WBInteraction000130995
      WBInteraction000131072
      WBInteraction000131095
      WBInteraction000131161
      WBInteraction000131183
      WBInteraction000131355
      WBInteraction000131908
      WBInteraction000131929
      WBInteraction000132068
      WBInteraction000132121
      WBInteraction000132172
      WBInteraction000132234
      WBInteraction000132303
      WBInteraction000132312
      WBInteraction000132313
      WBInteraction000132314
      WBInteraction000132315
      WBInteraction000132316
      WBInteraction000132317
      WBInteraction000132318
      WBInteraction000132319
      WBInteraction000132320
      WBInteraction000132321
      WBInteraction000132322
      WBInteraction000132323
      WBInteraction000132324
      WBInteraction000132325
      WBInteraction000132326
      WBInteraction000132327
      WBInteraction000132328
      WBInteraction000132329
      WBInteraction000132330
      WBInteraction000132331
      WBInteraction000132332
      WBInteraction000132333
      WBInteraction000132334
      WBInteraction000132335
      WBInteraction000132336
      WBInteraction000132337
      WBInteraction000132338
      WBInteraction000132339
      WBInteraction000132340
      WBInteraction000132341
      WBInteraction000132342
      WBInteraction000132343
      WBInteraction000132344
      WBInteraction000132345
      WBInteraction000132346
      WBInteraction000132347
      WBInteraction000132348
      WBInteraction000132349
      WBInteraction000132350
      WBInteraction000132351
      WBInteraction000132352
      WBInteraction000132353
      WBInteraction000132354
      WBInteraction000132355
      WBInteraction000132356
      WBInteraction000132357
      WBInteraction000132358
      WBInteraction000132359
      WBInteraction000132360
      WBInteraction000132361
      WBInteraction000132362
      WBInteraction000132363
      WBInteraction000132364
      WBInteraction000132365
      WBInteraction000132366
      WBInteraction000132367
      WBInteraction000132368
      WBInteraction000132369
      WBInteraction000132370
      WBInteraction000132371
      WBInteraction000132372
      WBInteraction000132373
      WBInteraction000132374
      WBInteraction000132375
      WBInteraction000132376
      WBInteraction000132377
      WBInteraction000132378
      WBInteraction000132379
      WBInteraction000132380
      WBInteraction000132381
      WBInteraction000132382
      WBInteraction000132383
      WBInteraction000132384
      WBInteraction000132385
      WBInteraction000132386
      WBInteraction000132387
      WBInteraction000132388
      WBInteraction000132389
      WBInteraction000132390
      WBInteraction000132391
      WBInteraction000132392
      WBInteraction000132393
      WBInteraction000132394
      WBInteraction000132395
      WBInteraction000132396
      WBInteraction000132397
      WBInteraction000132398
      WBInteraction000132399
      WBInteraction000133500
      WBInteraction000136771
      WBInteraction000137935
      WBInteraction000138901
      WBInteraction000141149
      WBInteraction000144924
      WBInteraction000148015
      WBInteraction000154129
      WBInteraction000157886
      WBInteraction000157948
      WBInteraction000158618
      WBInteraction000159406
      WBInteraction000159407
      WBInteraction000159408
      WBInteraction000159409
      WBInteraction000159949
      WBInteraction000170067
      WBInteraction000170068
      WBInteraction000171376
      WBInteraction000176777
      WBInteraction000178475
      WBInteraction000182620
      WBInteraction000187004
      WBInteraction000190333
      WBInteraction000195392
      WBInteraction000198542
      WBInteraction000199033
      WBInteraction000200450
      WBInteraction000200840
      WBInteraction000205417
      WBInteraction000205489
      WBInteraction000205793
      WBInteraction000208602
      WBInteraction000209229
      WBInteraction000213393
      WBInteraction000214185
      WBInteraction000217144
      WBInteraction000217594
      WBInteraction000220423
      WBInteraction000221770
      WBInteraction000227281
      WBInteraction000232716
      WBInteraction000237676
      WBInteraction000238651
      WBInteraction000242800
      WBInteraction000248272
      WBInteraction000248428
      WBInteraction000249066
      WBInteraction000251074
      WBInteraction000254593
      WBInteraction000258316
      WBInteraction000261769
      WBInteraction000261905
      WBInteraction000262311
      WBInteraction000262450
      WBInteraction000263781
      WBInteraction000269971
      WBInteraction000273080
      WBInteraction000283332
      WBInteraction000285060
      WBInteraction000285175
      WBInteraction000285604
      WBInteraction000285994
      WBInteraction000288854
      WBInteraction000294200
      WBInteraction000297763
      WBInteraction000298609
      WBInteraction000299244
      WBInteraction000300920
      WBInteraction000302259
      WBInteraction000305898
      WBInteraction000306736
      WBInteraction000307408
      WBInteraction000314888
      WBInteraction000315112
      WBInteraction000316459
      WBInteraction000319657
      WBInteraction000321178
      WBInteraction000321548
      WBInteraction000323329
      WBInteraction000325323
      WBInteraction000325634
      WBInteraction000327459
      WBInteraction000330802
      WBInteraction000332772
      WBInteraction000334153
      WBInteraction000334495
      WBInteraction000335753
      WBInteraction000336907
      WBInteraction000337680
      WBInteraction000338413
      WBInteraction000342240
      WBInteraction000343654
      WBInteraction000343952
      WBInteraction000344196
      WBInteraction000344370
      WBInteraction000345223
      WBInteraction000348191
      WBInteraction000349369
      WBInteraction000350648
      WBInteraction000353484
      WBInteraction000353807
      WBInteraction000353956
      WBInteraction000358071
      WBInteraction000358584
      WBInteraction000358931
      WBInteraction000362036
      WBInteraction000369134
      WBInteraction000370271
      WBInteraction000371325
      WBInteraction000372511
      WBInteraction000375270
      WBInteraction000375854
      WBInteraction000379169
      WBInteraction000382294
      WBInteraction000384678
      WBInteraction000387124
      WBInteraction000389227
      WBInteraction000391887
      WBInteraction000392213
      WBInteraction000397799
      WBInteraction000398510
      WBInteraction000402971
      WBInteraction000403943
      WBInteraction000404425
      WBInteraction000404718
      WBInteraction000405406
      WBInteraction000405686
      WBInteraction000407783
      WBInteraction000410237
      WBInteraction000415068
      WBInteraction000415736
      WBInteraction000417720
      WBInteraction000420504
      WBInteraction000420690
      WBInteraction000420937
      WBInteraction000423855
      WBInteraction000426839
      WBInteraction000427439
      WBInteraction000428947
      WBInteraction000433267
      WBInteraction000433268
      WBInteraction000433407
      WBInteraction000433875
      WBInteraction000435785
      WBInteraction000436969
      WBInteraction000437654
      WBInteraction000437756
      WBInteraction000438259
      WBInteraction000441340
      WBInteraction000442058
      WBInteraction000446015
      WBInteraction000449897
      WBInteraction000450481
      WBInteraction000455912
      WBInteraction000456134
      WBInteraction000457325
      WBInteraction000460765
      WBInteraction000462791
      WBInteraction000463469
      WBInteraction000463532
      WBInteraction000463940
      WBInteraction000463986
      WBInteraction000464579
      WBInteraction000464718
      WBInteraction000464719
      WBInteraction000464720
      WBInteraction000464721
      WBInteraction000464722
      WBInteraction000464723
      WBInteraction000465214
      WBInteraction000466362
      WBInteraction000466697
      WBInteraction000466781
      WBInteraction000466819
      WBInteraction000467422
      WBInteraction000467551
      WBInteraction000467667
      WBInteraction000467668
      WBInteraction000467669
      WBInteraction000467670
      WBInteraction000467671
      WBInteraction000467687
      WBInteraction000467950
      WBInteraction000468130
      WBInteraction000468163
      WBInteraction000468586
      WBInteraction000469768
      WBInteraction000470542
      WBInteraction000470786
      WBInteraction000471161
      WBInteraction000471653
      WBInteraction000472291
      WBInteraction000472292
      WBInteraction000472293
      WBInteraction000472294
      WBInteraction000472721
      WBInteraction000473376
      WBInteraction000474001
      WBInteraction000474084
      WBInteraction000474255
      WBInteraction000474873
      WBInteraction000474910
      WBInteraction000511120
      WBInteraction000511121
      WBInteraction000511122
      WBInteraction000516613
      WBInteraction000516614
      WBInteraction000516617
      WBInteraction000516618
      WBInteraction000539308
      WBInteraction000547907
      WBInteraction000559230
      WBInteraction000561497
      WBInteraction000568155
      WBInteraction000574979
      WBInteraction000579420
      WBInteraction000581034
  Map_info: Map: III Position: -2.37212 Error: 0.002052
    Positive: Positive_clone: F26F4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00029038
    WBPaper00038491
    WBPaper00048493
    WBPaper00055090
    WBPaper00064934
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene