WormBase Tree Display for Gene: WBGene00013294

WBGene00013294 SMap: S_parent: Sequence: CHROMOSOME_IV
  Identity: Version: 2
    Name: CGC_name: pals-30 Person_evidence: WBPerson260
      Sequence_name: Y57G11B.1
      Molecular_name: Y57G11B.1
        WP:CE16665
        CE16665
        Y57G11B.1.1
      Other_name: CELE_Y57G11B.1 Accession_evidence: NDB BX284604
      Public_name: pals-30
    DB_info: Database: AceView gene 4P306
        WormQTL gene WBGene00013294
        WormFlux gene WBGene00013294
        NDB locus_tag CELE_Y57G11B.1
        NCBI gene 190365
        RefSeq mRNA NM_070365.1
          protein NP_502766.1
            NM_070365.2
        TREEFAM TREEFAM_ID TF322379
        UniProt UniProtAcc G5EF79
        TrEMBL UniProtAcc G5EF79
        UniProt_GCRP UniProtAcc G5EF79
    Species: Caenorhabditis elegans
    History: Version_change (2)
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pals
    Allele (97)
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP4603
    Ortholog: WBGene00142109 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00161337 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00061028 Caenorhabditis remanei From_analysis: OMA
      Sp34_30320300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g12495 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (11)
    Structured_description: Automated_description: Enriched in NSM based on tiling array studies. Is affected by several genes including daf-16; skn-1; and glp-1 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including Mercuric Chloride; Psoralens; and allantoin based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y57G11B.1
    Corresponding_transcript: Y57G11B.1.1
    Associated_feature: WBsf1018665
      WBsf1018666
  Experimental_info: RNAi_result: WBRNAi00037589 Inferred_automatically: RNAi_primary
      WBRNAi00021130 Inferred_automatically: RNAi_primary
      WBRNAi00057676 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025596
      Expr1161082
      Expr2014702
      Expr2032938
    Drives_construct: WBCnstr00029707
    Construct_product: WBCnstr00029707
    Microarray_results (13)
    Expression_cluster: WBPaper00032425:up_in_lin-35
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00044316:HgCl2_20uM_upregulated
      WBPaper00045401:N.parisii_8h_upregulated
      WBPaper00045401:N.parisii_16h_upregulated
      WBPaper00045401:N.parisii_30h_upregulated
      WBPaper00045417:128Q-huntingtin_upreglated
      WBPaper00045934:wrn-1(gk99)_downregulated
      WBPaper00045974:NSM_enriched_totalRNA_tiling
      WBPaper00047132:glp-1(ts)-25C_upregulated
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050080:rbr-2(tm3141)_upregulated
      WBPaper00050370:dpy-21(e428)_L3_downregulated
      WBPaper00050504:hrp-2(RNAi)_upregulated
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00051137:N.parisii-virus_upregulated_N2
      WBPaper00051137:Orsay-virus_upregulated_N2
      WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
      WBPaper00051558:aging_regulated
      WBPaper00053020:OrsayVirus-infection_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:mes-4(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
      WBPaper00053657:JU2519_M.humicola-infection_24hr
      WBPaper00053888:drh-3(rrr2)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056034:pals-25(jy9)_upregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00059253:sucrose_downregulated
      WBPaper00059253:sucrose_stearic-acid_downregulated
      WBPaper00059426:SiO2-nanoparticles_downregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060871:M.humicola-extract_4h_regulated
      WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
      WBPaper00061319:pnp-1(jy90)_upregulated
      WBPaper00061319:pnp-1(jy121)_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061527:C17H1.6-C17H1.13
      WBPaper00061636:atracurium_downregulated
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00062056:lin-15B(n744)_upregulated
      WBPaper00062056:lin-15B(we23)_upregulated
      WBPaper00062056:lin-37(n758)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00062345:bortezomib_30min_upregulated_N2
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062587:lsl-1(ljm1)_downregulated
      WBPaper00062587:lsl-1(tm4769)_downregulated
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064532:pals-25(jy111)_upregulated
      WBPaper00064539:nhr-114(gk849)_downregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00065086:JU1400_N.ausubeli_regulated
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065086:JU1400_N.ironsii_regulated
      WBPaper00065086:JU1400_N.parisii_regulated
      WBPaper00065086:N2_N.ausubeli_regulated
      WBPaper00065086:N2_N.ferruginous_regulated
      WBPaper00065086:N2_N.ironsii_regulated
      WBPaper00065086:N2_N.parisii_regulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
      WBPaper00065149:lin-52(n771)_upregulated
      WBPaper00065841:23_0
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065995:M.humicola-extract_downregulated_N2
      WBPaper00066204:CdCl2_upregulated_mRNA
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4489_group_2
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00035227:heat_shock_regulated
      WBPaper00041609:hpl-1_hpl-2_upregulated
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00042574:rde-1(ne219)_OrsayVirus_upregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
    Interaction: WBInteraction000114936
      WBInteraction000127549
      WBInteraction000133656
      WBInteraction000134237
      WBInteraction000135228
      WBInteraction000138608
      WBInteraction000141365
      WBInteraction000146090
      WBInteraction000147040
      WBInteraction000148465
      WBInteraction000150533
      WBInteraction000175817
      WBInteraction000175940
      WBInteraction000176243
      WBInteraction000176886
      WBInteraction000179322
      WBInteraction000182696
      WBInteraction000183462
      WBInteraction000188955
      WBInteraction000190028
      WBInteraction000192305
      WBInteraction000193203
      WBInteraction000195939
      WBInteraction000201202
      WBInteraction000204162
      WBInteraction000205173
      WBInteraction000206573
      WBInteraction000213139
      WBInteraction000223890
      WBInteraction000224304
      WBInteraction000225455
      WBInteraction000233586
      WBInteraction000234767
      WBInteraction000236923
      WBInteraction000238241
      WBInteraction000239191
      WBInteraction000241767
      WBInteraction000245572
      WBInteraction000246017
      WBInteraction000247266
      WBInteraction000248151
      WBInteraction000249394
      WBInteraction000273680
      WBInteraction000274401
      WBInteraction000277884
      WBInteraction000284237
      WBInteraction000284249
      WBInteraction000284495
      WBInteraction000285680
      WBInteraction000287347
      WBInteraction000288219
      WBInteraction000291544
      WBInteraction000293670
      WBInteraction000300967
      WBInteraction000303448
      WBInteraction000303872
      WBInteraction000307716
      WBInteraction000307909
      WBInteraction000310109
      WBInteraction000311580
      WBInteraction000312167
      WBInteraction000313584
      WBInteraction000313945
      WBInteraction000316067
      WBInteraction000324175
      WBInteraction000326583
      WBInteraction000327454
      WBInteraction000328619
      WBInteraction000335385
      WBInteraction000337758
      WBInteraction000338847
      WBInteraction000338949
      WBInteraction000340136
      WBInteraction000342210
      WBInteraction000346096
      WBInteraction000346199
      WBInteraction000357323
      WBInteraction000365027
      WBInteraction000369721
      WBInteraction000371706
      WBInteraction000371829
      WBInteraction000374240
      WBInteraction000383512
      WBInteraction000386942
      WBInteraction000390439
      WBInteraction000393823
      WBInteraction000394876
      WBInteraction000394952
      WBInteraction000397028
      WBInteraction000400767
      WBInteraction000405980
      WBInteraction000414612
      WBInteraction000414662
      WBInteraction000416308
      WBInteraction000417686
      WBInteraction000424866
      WBInteraction000432458
      WBInteraction000437012
      WBInteraction000444586
      WBInteraction000449210
      WBInteraction000449958
      WBInteraction000451014
      WBInteraction000455294
      WBInteraction000560970
  Map_info: Positive: Positive_clone: Y57G11B Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 12.2282
  Reference: WBPaper00061319
    WBPaper00062345
  Method: Gene