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WormBase Tree Display for Gene: WBGene00008035

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Name Class

WBGene00008035SMapS_parentSequenceC39E9
IdentityVersion1
NameSequence_nameC39E9.12
Molecular_nameC39E9.12
C39E9.12.1
CE39690
Other_nameCELE_C39E9.12Accession_evidenceNDBBX284604
Public_nameC39E9.12
DB_infoDatabaseAceViewgene4N859
WormQTLgeneWBGene00008035
WormFluxgeneWBGene00008035
NDBlocus_tagCELE_C39E9.12
NCBIgene178258
RefSeqproteinNM_070115.10
TrEMBLUniProtAccQ18546
UniProt_GCRPUniProtAccQ18546
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (26)
RNASeq_FPKM (74)
Contained_in_operonCEOP4528
Ortholog (22)
ParalogWBGene00012769Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017620Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in several structures, including ABplapaaapa; ABplapppapp; ABprapaaapa; ciliated neurons; and germ line based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by fifteen chemicals including stavudine; Zidovudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SAP domain and SAP domain superfamily.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC39E9.12
Corresponding_CDS_historyC39E9.12:wp154
Corresponding_transcriptC39E9.12.1
Other_sequenceCJC18214_1
CR09383
CRC07866_1
CJC00842_1
CR09384
CGC00913_1
Associated_featureWBsf646510
WBsf998328
WBsf229384
Experimental_infoRNAi_resultWBRNAi00042217Inferred_automaticallyRNAi_primary
WBRNAi00007821Inferred_automaticallyRNAi_primary
WBRNAi00011787Inferred_automaticallyRNAi_primary
Expr_patternExpr1022928
Expr1033493
Expr1146208
Expr2001540
Expr2019761
Drives_constructWBCnstr00033288
Construct_productWBCnstr00033288
Microarray_results (19)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032425:up_in_lin-35
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044760:germline_specific
WBPaper00045521:Oogenic
WBPaper00045571:germline-ablation_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00046509:htz-1(ok3099)_upregulated
WBPaper00046509:lin-35(n745)_upregulated
WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049905:Age_variant_expression
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050193:cec-4(ok3124)_downregulated_L1
WBPaper00050193:met-2(n4256)set-25(n5021)_downregulated_L1
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050522:mafr-1(tm6082)_downregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00051265:F1_morc-1(tm6048)_downregulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053713:Starvation-induced_postdauer_vs_control_downregulated
WBPaper00055103:thoc-5(wy822)_downregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055648:germline_expressed
WBPaper00055827:daf-2(e1370)_downregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056161:hermaphrodite_enriched_siRNA
WBPaper00056165:MINA-1_interacting_mRNA
WBPaper00056284:ints-5(RNAi)_downregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057154:HeatShock_downregulated_mRNA
WBPaper00057288:Cold_downregulated_transcript
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058691:WDR-5.1_interacting_protein
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061007:HB101_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061045:Y56A3A.22(cck200)_downregulated
WBPaper00061274:hypergravity_15xg_upregulated
WBPaper00061274:microgravity_upregulated
WBPaper00061285:wounding_24h_upregulated
WBPaper00061340:ADA_ADE_grandparent
WBPaper00061340:Ciliated_non_amphid_neuron
WBPaper00061340:Neuroblast_AIZ_FLP
WBPaper00061340:Neuroblast_HSN_PHB
WBPaper00061340:Neuroblast_IL1_IL2
WBPaper00061340:PLM_ALN_grandparent
WBPaper00061340:PLM_ALN_great_grandparent
WBPaper00061527:pch-2-B0393.3
WBPaper00061699:daf-18(ok480)_upregulated
WBPaper00061753:csr-1(tor159)_downregulated_25C
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062056:lin-36(we36)_upregulated
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064716:paraquat_upregulated
WBPaper00064871:hypoxia_upregulated_F1
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065149:lin-52(n771)_upregulated
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00065373:sek-1(km4)_upregulated_Ref
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_1
WBPaper00005124:cholesterol_10-9M_regulated
WBPaper00025032:cluster_36
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026952:class_A
WBPaper00035905:FBF-1_Associated
WBPaper00036123:Fluoranthene_regulated
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_B
WBPaper00038060:SUMO-1_upregulated
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00039866:ClassComp_daf-19_upregulated
WBPaper00040426:CYD-1_CDK-4_upregulated
WBPaper00040426:CYE-1_CDK-2AF_upregulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040963:TA300_down
WBPaper00041002:HF_11d_2.0mM_Up
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042128:gei-8(ok1671)_downregulated
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00048637:lin-35(n745)_starvation_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00053550:daf-19(m86)_upregulated_3-fold-embryo
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:Cluster_F
[cgc6390]:oogenesis-enriched
InteractionWBInteraction000105279
WBInteraction000122438
WBInteraction000143588
WBInteraction000149154
WBInteraction000161697
WBInteraction000170532
WBInteraction000172269
WBInteraction000177557
WBInteraction000181332
WBInteraction000190540
WBInteraction000197899
WBInteraction000198257
WBInteraction000199497
WBInteraction000207154
WBInteraction000210146
WBInteraction000214281
WBInteraction000221400
WBInteraction000221818
WBInteraction000229547
WBInteraction000231041
WBInteraction000231070
WBInteraction000240340
WBInteraction000241244
WBInteraction000241686
WBInteraction000242419
WBInteraction000244728
WBInteraction000245163
WBInteraction000251653
WBInteraction000252678
WBInteraction000255437
WBInteraction000255717
WBInteraction000262074
WBInteraction000263186
WBInteraction000265506
WBInteraction000265663
WBInteraction000266279
WBInteraction000267105
WBInteraction000269706
WBInteraction000274969
WBInteraction000275885
WBInteraction000277100
WBInteraction000290069
WBInteraction000292351
WBInteraction000295732
WBInteraction000297033
WBInteraction000298713
WBInteraction000307225
WBInteraction000310353
WBInteraction000315593
WBInteraction000319439
WBInteraction000320845
WBInteraction000323463
WBInteraction000324763
WBInteraction000328081
WBInteraction000330741
WBInteraction000332375
WBInteraction000340099
WBInteraction000340481
WBInteraction000342761
WBInteraction000343267
WBInteraction000344831
WBInteraction000347850
WBInteraction000348797
WBInteraction000351397
WBInteraction000353253
WBInteraction000353549
WBInteraction000354281
WBInteraction000355217
WBInteraction000355291
WBInteraction000360106
WBInteraction000360381
WBInteraction000360387
WBInteraction000364389
WBInteraction000364661
WBInteraction000371071
WBInteraction000373589
WBInteraction000376052
WBInteraction000378749
WBInteraction000381029
WBInteraction000381254
WBInteraction000383403
WBInteraction000386452
WBInteraction000405017
WBInteraction000410867
WBInteraction000424624
WBInteraction000424973
WBInteraction000427643
WBInteraction000427728
WBInteraction000427795
WBInteraction000431361
WBInteraction000432985
WBInteraction000435498
WBInteraction000442953
WBInteraction000443137
WBInteraction000449961
WBInteraction000450418
WBInteraction000452174
WBInteraction000456412
WBInteraction000458876
WBInteraction000460806
WBInteraction000539380
WBInteraction000582442
Map_infoPositivePositive_cloneC39E9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV7.85328
MethodGene