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WormBase Tree Display for Gene: WBGene00004086

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Name Class

WBGene00004086EvidenceCGC_data_submission
SMapS_parentSequenceY49E10
IdentityVersion1
NameCGC_namepph-4.2Person_evidenceWBPerson634
Sequence_nameY49E10.3
Molecular_nameY49E10.3
Y49E10.3.1
CE22221
Other_nameCELE_Y49E10.3Accession_evidenceNDBBX284603
Public_namepph-4.2
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:34WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpph
Allele (127)
RNASeq_FPKM (74)
GO_annotation (13)
Contained_in_operonCEOP3760
Ortholog (35)
Paralog (44)
Structured_descriptionConcise_descriptionpph-4.2 encodes a member of the PPP family of protein serine threonine phosphatases and is a homolog of protein phosphatase 4 (PP4); affects larval viability at low penetrance in RNAi screens.Paper_evidenceWBPaper00005225
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in double-strand break repair via homologous recombination. Predicted to be located in cytoplasm and nucleus. Is an ortholog of human PPP4C (protein phosphatase 4 catalytic subunit).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY49E10.3
Corresponding_CDS_historyY49E10.3b:wp279
Corresponding_transcriptY49E10.3.1
Other_sequence (31)
Associated_featureWBsf651538
WBsf994628
WBsf994629
WBsf994630
WBsf1016183
WBsf1016184
WBsf1016185
WBsf1016186
WBsf227658
WBsf227659
Experimental_infoRNAi_result (13)
Expr_patternExpr1018638
Expr1031970
Expr1160467
Expr2015013
Expr2033248
Drives_constructWBCnstr00019772
WBCnstr00019773
WBCnstr00019774
Microarray_results (24)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:germline-precursors_embryo_enriched
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_downregulated
WBPaper00045729:gld-2(RNAi)_downregulated
WBPaper00046337:monosomal_N2_vs_daf-2_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048611:MnCl2_downregulated
WBPaper00048762:FOG-1_associated
WBPaper00048762:FOG-3_associated
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050522:mafr-1(tm6082)_downregulated
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051039:germline_enriched
WBPaper00051558:aging_regulated
WBPaper00051558:fog-2(q71)_regulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_fed-L1_Truseq
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00054191:H3.3(null)_L1_upregulated
WBPaper00054192:cold-shock_downregulated
WBPaper00054792:FOG-3_interacting
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Metformin_downregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin_upregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055648:germline_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056284:ints-5(RNAi)_downregulated
WBPaper00056290:hsp-6(mg585)_downregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057154:HeatShock_downregulated_mRNA
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00058691:set-2(bn129)_downregulated
WBPaper00058948:PA14_upregulated
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061203:let-418(n3536)_downregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061203:spr-1(ok2144)_downregulated
WBPaper00061340:Parent_of_K_Kprime
WBPaper00061479:HDA-1_interacting_protein
WBPaper00061527:F31C3.4_6048-cutc-1_15804
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062446:nhr-8(hd117)_downregulated
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064315:mes-3(bn199)_downregulated_PGCs
WBPaper00064315:met-1(bn200)_downregulated_PGCs
WBPaper00064403:Heat-killed-E.Coli_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00064871:hypoxia_upregulated_F1
WBPaper00064952:Day1_vs_L4_upregulated_20C
WBPaper00064952:Day1_vs_L4_upregulated_25C
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065258:anchor-cell_depleted
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_2
WBPaper00025032:cluster_1
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00032165:A_to_C_transit_decreased
WBPaper00032165:differentially_expressed_with_age_medoid_3
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_F
WBPaper00037147:heatshock_upregulated
WBPaper00037611:RNP-8-associated
WBPaper00037901:GLD-1_mRNA_targets
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045263:isp-1(qm150)_upregulated
WBPaper00045673:colistin_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00051387:Triclosan_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00056330:mrps-5(RNAi)_downregulated
[cgc5767]:cluster_9
[cgc5767]:expression_class_E
[cgc5767]:expression_class_ET
[cgc5767]:expression_class_ET_max(23_min)
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc5767]:expression_class_MET
[cgc6390]:Cluster_F
[cgc6390]:oogenesis-enriched
InteractionWBInteraction000113662
WBInteraction000127223
WBInteraction000134088
WBInteraction000170408
WBInteraction000171263
WBInteraction000238394
WBInteraction000277024
WBInteraction000340957
WBInteraction000350137
WBInteraction000366347
WBInteraction000430189
WBInteraction000431917
WBInteraction000460515
WBInteraction000464886
WBInteraction000465470
WBInteraction000470917
WBInteraction000471753
WBInteraction000471754
WBInteraction000471755
WBInteraction000471756
WBInteraction000471757
WBInteraction000471758
WBInteraction000471759
WBInteraction000471760
WBInteraction000471761
WBInteraction000471762
WBInteraction000471763
WBInteraction000471764
WBInteraction000471765
WBInteraction000471766
WBInteraction000471767
WBInteraction000471768
WBInteraction000472980
WBInteraction000565347
WBInteraction000565379
WBInteraction000574243
WBInteraction000575245
Map_infoMapIIIPosition17.3583Error0.034655
PositivePositive_cloneY49E10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00005225
WBPaper00011887
WBPaper00017019
WBPaper00023689
WBPaper00026065
WBPaper00027281
WBPaper00032438
WBPaper00038491
WBPaper00055090
RemarkSequence connection from [Sugimoto A]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene