WormBase Tree Display for Gene: WBGene00003148

WBGene00003148 Evidence: Person_evidence: WBPerson29
  SMap: S_parent: Sequence: CHROMOSOME_IV
  Identity (6)
  Gene_info: Biotype: SO:0001217
    Gene_class: mbf
    Allele (22)
    Strain: WBStrain00036428
    RNASeq_FPKM (74)
    GO_annotation: 00096147
      00096148
      00096149
      00105386
    Contained_in_operon: CEOP4444
    Ortholog (34)
    Structured_description: Automated_description: Predicted to enable DNA binding activity. Predicted to be located in nucleus. Expressed in tail. Is an ortholog of human EDF1 (endothelial differentiation related factor 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: H21P03.1
    Corresponding_transcript: H21P03.1.1
    Other_sequence (78)
    Associated_feature: WBsf652216
      WBsf668331
      WBsf981823
      WBsf230884
    Gene_product_binds (70)
    Transcription_factor: WBTranscriptionFactor001030
  Experimental_info: RNAi_result: WBRNAi00049451 Inferred_automatically: RNAi_primary
      WBRNAi00033736 Inferred_automatically: RNAi_primary
      WBRNAi00016290 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr6279
      Expr1022740
      Expr1031484
      Expr1153178
      Expr1200138
      Expr2013430
      Expr2031664
    Drives_construct: WBCnstr00002492
      WBCnstr00036217
    Construct_product: WBCnstr00016780
      WBCnstr00016814
      WBCnstr00016815
      WBCnstr00036217
    Microarray_results (19)
    Expression_cluster: WBPaper00032528:L3_enriched
      WBPaper00033070:Elbe_upregulated
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044316:CH3HgCl_7.5uM_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_downregulated
      WBPaper00045974:NSM_enriched_DSN-treated_RNAseq
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00049942:HeatShock_upregulated_hsf-1(+)
      WBPaper00049954:BPS_downregulated
      WBPaper00050199:hsf-1(ok600)_downregulated
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050698:DEP-1_interacting
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:epidermis_nucleus_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_nucleus_expressed
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053321:embryo-to-L1_upregulated_WT_SMARTseq
      WBPaper00053321:lin-15B(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
      WBPaper00054192:cold-shock_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055648:germline_expressed
      WBPaper00055897:heat-shock_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00057041:spc-1(cas971)_upregulated
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:set-2(bn129)_downregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059328:mrps-5(RNAi)_downregulated_protein
      WBPaper00059334:SACY-1_interacting
      WBPaper00059605:MUT-16_interacting
      WBPaper00059895:wounding_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061340:ALN
      WBPaper00061377:MYRF-1_interacting
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061527:tars-1-AFFX-r2-3026-5_at
      WBPaper00061651:I5_enriched
      WBPaper00061651:M5_enriched
      WBPaper00061651:MI_enriched
      WBPaper00061651:SIA_enriched
      WBPaper00061651:SIB_enriched
      WBPaper00061651:VB01_enriched
      WBPaper00061651:VB02_enriched
      WBPaper00061651:VB_enriched
      WBPaper00062056:lin-37(n758)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062520:qui-1(db104)_downregulated
      WBPaper00062554:MAGU-2_interacting
      WBPaper00062590:Aging_upregulated_neuron
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064055:trl-1(cas1077)_downregulated_starved
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064494:postdauer_downregulated_AWA
      WBPaper00064716:paraquat_upregulated
      WBPaper00064871:hypoxia_upregulated_F2
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065158:AFD_depleted
      WBPaper00065315:mating_upregulated_Day2-7
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065841:13_0
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066550:VB1_enriched
      cgc4489_group_1
      WBPaper00005124:cholesterol_10-9M_regulated
      WBPaper00025032:cluster_4
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00032948:FedUp
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00037695:WC_5-day
      WBPaper00040210:Chlorpyrifos_24C_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00044091:Bpseudomallei_induced_2h
      WBPaper00044091:Bpseudomallei_induced_4h
      WBPaper00044091:Bpseudomallei_induced_8h
      WBPaper00044091:Bpseudomallei_induced_12h
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00048637:lin-35(n745)_starvation_upregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00050520:lagr-1(gk327);hyl-1(ok976)_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_1
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(41_min)
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
    Interaction: WBInteraction000151082
      WBInteraction000162416
      WBInteraction000162869
      WBInteraction000162912
      WBInteraction000162946
      WBInteraction000162947
      WBInteraction000163014
      WBInteraction000167363
      WBInteraction000167364
      WBInteraction000173637
      WBInteraction000185402
      WBInteraction000185403
      WBInteraction000188592
      WBInteraction000211124
      WBInteraction000234180
      WBInteraction000235567
      WBInteraction000236137
      WBInteraction000259160
      WBInteraction000261621
      WBInteraction000294290
      WBInteraction000305787
      WBInteraction000320334
      WBInteraction000362985
      WBInteraction000388602
      WBInteraction000415583
      WBInteraction000439241
      WBInteraction000444513
      WBInteraction000455800
      WBInteraction000469482
      WBInteraction000474023
      WBInteraction000534671
      WBInteraction000557811
      WBInteraction000558939
      WBInteraction000566221
      WBInteraction000566500
      WBInteraction000566863
      WBInteraction000569408
      WBInteraction000570445
      WBInteraction000571110
      WBInteraction000572076
      WBInteraction000580145
      WBInteraction000583680
      WBInteraction000584101
  Map_info: Map: IV Position: 4.98838 Error: 0.000462
    Positive: Positive_clone: H21P03 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00061738
  Remark: The naming of the locus mbf-1 is based on its high similarity with mbf1 gene in human, Drosophila, yeast, plant Person_evidence: WBPerson29
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene