WormBase Tree Display for Gene: WBGene00006375
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WBGene00006375 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F26D2 | ||||||
Identity | Version | 2 | |||||||
Name | CGC_name | syp-1 | Person_evidence | WBPerson1547 | |||||
Sequence_name | F26D2.2 | ||||||||
Molecular_name | F26D2.2 | ||||||||
F26D2.2.1 | |||||||||
CE33925 | |||||||||
Other_name | CELE_F26D2.2 | Accession_evidence | NDB | BX284605 | |||||
Public_name | syp-1 | ||||||||
DB_info | Database (9) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 10 Jun 2014 12:12:12 | WBPerson1983 | Event | Acquires_merge | WBGene00043289 | ||||
Acquires_merge | WBGene00043289 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | syp | ||||||||
Allele (63) | |||||||||
Strain | WBStrain00000290 | ||||||||
WBStrain00034785 | |||||||||
WBStrain00034786 | |||||||||
WBStrain00051119 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00020833 | ||||||||
00020834 | |||||||||
00020835 | |||||||||
00020836 | |||||||||
00020837 | |||||||||
00020838 | |||||||||
00020839 | |||||||||
00020840 | |||||||||
00020841 | |||||||||
Ortholog | WBGene00057339 | Caenorhabditis remanei | From_analysis | OMA | |||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WBGene00025487 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
OrthoMCL | |||||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WBGene00127788 | Caenorhabditis japonica | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
chrV_pilon.g17139 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | syp-1 encodes a coiled-coil protein; syp-1 activity is required for stabilizing homologous associations between paired meiotic prophase chromosomes and for promoting crossover recombination; SYP-1 is a synaptonemal complex component that localizes to the central element that forms between paired homologous pachytene chromosomes. | Paper_evidence | WBPaper00005462 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 16 Mar 2009 00:00:00 | ||||||||
Automated_description | Enables protein homodimerization activity. Involved in positive regulation of reciprocal meiotic recombination; regulation of chromosome segregation; and synaptonemal complex assembly. Located in central element. Expressed in germ line. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F26D2.2 | |||||||
Corresponding_CDS_history | F26D2.2:wp100 | ||||||||
Corresponding_transcript | F26D2.2.1 | ||||||||
Other_sequence | GR977571.1 | ||||||||
SC00265 | |||||||||
CBC02102_1 | |||||||||
CBC06172_1 | |||||||||
CJC04954_1 | |||||||||
Associated_feature | WBsf233110 | ||||||||
Experimental_info | RNAi_result (31) | ||||||||
Expr_pattern | Expr2201 | ||||||||
Expr8709 | |||||||||
Expr13902 | |||||||||
Expr15873 | |||||||||
Expr1011476 | |||||||||
Expr1032573 | |||||||||
Expr1149544 | |||||||||
Expr1200232 | |||||||||
Expr1200233 | |||||||||
Expr2017184 | |||||||||
Expr2035320 | |||||||||
Drives_construct | WBCnstr00034384 | ||||||||
Construct_product | WBCnstr00016721 | ||||||||
WBCnstr00034384 | |||||||||
Antibody (22) | |||||||||
Microarray_results (30) | |||||||||
Expression_cluster (147) | |||||||||
Interaction (126) | |||||||||
Map_info | Map | V | Position | 10.0424 | Error | 0.001284 | |||
Positive | Positive_clone | F26D2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4776 | |||||||
5344 | |||||||||
Pseudo_map_position | |||||||||
Reference (88) | |||||||||
Remark | Sequence connection from [Villeneuve AM] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
[140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||||
Method | Gene |