WormBase Tree Display for Gene: WBGene00001394
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WBGene00001394 | SMap | S_parent | Sequence | W02A2 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fat | ||||||
Allele (35) | |||||||
Strain | WBStrain00031679 | ||||||
WBStrain00004011 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (22) | |||||||
Ortholog (32) | |||||||
Paralog | WBGene00001393 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Concise_description | fat-2 encodes a delta-12 fatty acyl desaturase that increases membranefluidity when expressed in yeast, and that may protect against coldstress; FAT-2's substrate is unknown, but may be acyl-CoA; FAT-2 isrequired in vivo for normal levels of C18 or C20 polyunsaturated fattyacids (PUFAs); FAT-2 is fully required for a sperm-attracting cue(perhaps an eicosanoid) secreted by oocytes, and partially required forthe polarizing activity of PAR-3, PAR-6, and other proteins; FAT-2 isalso required for a normally fast growth rate and movement rate, and fornormal body shape, defecation rhythm, and brood size; when expressed in yeast, FAT-2 exhibits a v+3 mode of desaturase activity, catalyzing double bond formation three carbons from an existing double bond. | Paper_evidence | WBPaper00003999 | |||
WBPaper00005233 | |||||||
WBPaper00005728 | |||||||
WBPaper00013538 | |||||||
WBPaper00013550 | |||||||
WBPaper00024509 | |||||||
WBPaper00027724 | |||||||
WBPaper00028527 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson567 | |||||||
Date_last_updated | 10 Jun 2010 00:00:00 | ||||||
Automated_description | Enables stearoyl-CoA 9-desaturase activity. Involved in several processes, including collagen and cuticulin-based cuticle development; fatty acid biosynthetic process; and innate immune response. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info (4) | |||||||
Experimental_info | RNAi_result (19) | ||||||
Expr_pattern | Chronogram1822 | ||||||
Expr6815 | |||||||
Expr1021921 | |||||||
Expr1030834 | |||||||
Expr1158089 | |||||||
Expr2011435 | |||||||
Expr2029673 | |||||||
Drives_construct | WBCnstr00003419 | ||||||
WBCnstr00036975 | |||||||
Construct_product | WBCnstr00036975 | ||||||
Microarray_results (19) | |||||||
Expression_cluster (258) | |||||||
Interaction (211) | |||||||
WBProcess | WBbiopr:00000121 | ||||||
Map_info | Map | IV | Position | 8.52821 | Error | 0.001854 | |
Positive | Positive_clone | W02A2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4297 | |||||
4298 | |||||||
Pseudo_map_position | |||||||
Reference (56) | |||||||
Remark | M03A8.1 link removed by agreement. [sdm 0107] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |