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WormBase Tree Display for Gene: WBGene00004467

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Name Class

WBGene00004467EvidenceCGC_data_submission
SMapS_parentSequenceK07D4
IdentityVersion1
NameCGC_namerpn-11Person_evidenceWBPerson1551
Sequence_nameK07D4.3
Molecular_nameK07D4.3
K07D4.3.1
CE19527
K07D4.3.2
Other_nameCELE_K07D4.3Accession_evidenceNDBBX284602
Public_namerpn-11
DB_infoDatabaseAceViewgene2E332
WormQTLgeneWBGene00004467
WormFluxgeneWBGene00004467
NDBlocus_tagCELE_K07D4.3
PanthergeneCAEEL|WormBase=WBGene00004467|UniProtKB=O76577
familyPTHR10410
NCBIgene173744
RefSeqproteinNM_062311.9
KEGGKEGG_id3.4.19.-
NemaPathKEGG_id3.4.19.-
SwissProtUniProtAccO76577
TREEFAMTREEFAM_IDTF105748
UniProt_GCRPUniProtAccO76577
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:35WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrpn
Allele (36)
RNASeq_FPKM (74)
GO_annotation (19)
OrthologWBGene00064970Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00042178Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00151549Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00134947Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00066912Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00234130Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g6585Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g14692Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g20289Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g420Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g12775Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g27275Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g11400Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g11818Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g11373Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g17143Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g21012Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g11472Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_06152.g20095Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_II.g4310Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g4327Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold500.g2283Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_03066.g28949Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_08681Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_09525Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_09530Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_23576Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_003971Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_003979Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_003984Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_007054Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_007059Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04496Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g22668Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20238300Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g4171Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00239196Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00094058Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00108809Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00271946Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00256083Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291781Trichuris murisFrom_analysisWormBase-Compara
SGD:S000001900Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0028694Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-070410-56Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:16889Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1913284Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1594532Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00000817Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001231Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00018135Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionrpn-11 encodes a predicted non-ATPase subunit of the 19S regulatory complex of the proteasome that affects adult viability, osmoregulation, embryonic viability, and movement; interacts with itself, RPN-9, and F55A11.3, based on yeast two-hybrid assays.Paper_evidenceWBPaper00004888
WBPaper00005654
WBPaper00006395
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable metallopeptidase activity and proteasome binding activity. Involved in programmed cell death involved in cell development. Predicted to be part of proteasome regulatory particle, lid subcomplex. Is an ortholog of human PSMD14 (proteasome 26S subunit, non-ATPase 14).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSK07D4.3
Corresponding_transcriptK07D4.3.1
K07D4.3.2
Other_sequence (115)
Associated_featureWBsf649992
WBsf987466
WBsf222900
Experimental_infoRNAi_result (21)
Expr_patternExpr1011772
Expr1032270
Expr1153850
Expr2015486
Expr2033721
Drives_constructWBCnstr00008741
WBCnstr00008743
Construct_productWBCnstr00008743
Microarray_results (22)
Expression_cluster (153)
Interaction (248)
Map_infoMapIIPosition-5.68933Error0.009759
PositivePositive_cloneK07D4Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
Reference (14)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene