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WormBase Tree Display for Gene: WBGene00003795

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Name Class

WBGene00003795SMapS_parentSequenceF59A2
IdentityVersion1
NameCGC_namenpp-9Person_evidenceWBPerson1780
Sequence_nameF59A2.1
Molecular_nameF59A2.1a
F59A2.1a.1
CE17939
F59A2.1b
CE33525
F59A2.1a.2
F59A2.1b.1
Other_nameNup358Paper_evidenceWBPaper00026834
CELE_F59A2.1Accession_evidenceNDBBX284603
Public_namenpp-9
DB_infoDatabaseAceViewgene3E490
WormQTLgeneWBGene00003795
WormFluxgeneWBGene00003795
NDBlocus_tagCELE_F59A2.1
PanthergeneCAEEL|WormBase=WBGene00003795|UniProtKB=Q86G90
familyPTHR23138
NCBIgene175443
RefSeqproteinNM_001384054.1
NM_001384053.2
TREEFAMTREEFAM_IDTF314797
TrEMBLUniProtAccQ86G90
Q21021
UniProt_GCRPUniProtAccQ86G90
OMIMgene601181
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:33WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnpp
Allele (66)
Possibly_affected_byWBVar02153243
StrainWBStrain00037569
WBStrain00050853
WBStrain00054781
RNASeq_FPKM (74)
GO_annotation00070018
00070019
00070020
00070021
00070022
00083277
00083278
00083279
00083280
00111816
OrthologWBGene00054866Caenorhabditis remaneiFrom_analysis (3)
WBGene00031379Caenorhabditis briggsaeFrom_analysis (5)
WBGene00157544Caenorhabditis brenneriFrom_analysis (3)
WBGene00208146Caenorhabditis japonicaFrom_analysis (2)
WBGene00224833Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g5632Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7268Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g20223Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g16303Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6786Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15560Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g15561Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g6501Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g5510Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g13708Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g8619Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g8128Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00212.g7121Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_04760.g19100Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-npp-9Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g9464Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00121.g4902Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_10312Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_009674Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09525Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13199Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14347Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g12222Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30217600Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g7244Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00119681Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00242766Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00111365Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00263038Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00294268Trichuris murisFrom_analysisWormBase-Compara
SGD:S000002409Saccharomyces cerevisiaeFrom_analysis (3)
FB:FBgn0039302Drosophila melanogasterFrom_analysis (6)
ZFIN:ZDB-GENE-081104-93Danio rerioFrom_analysis (2)
HGNC:9848Homo sapiensFrom_analysis (4)
MGI:894323Mus musculusFrom_analysis (4)
RGD:1560047Rattus norvegicusFrom_analysis (4)
ParalogWBGene00003802Caenorhabditis elegansFrom_analysisPanther
WBGene00004306Caenorhabditis elegansFrom_analysis (2)
Structured_descriptionAutomated_descriptionPredicted to enable metal ion binding activity. Predicted to contribute to GTPase activator activity. Involved in embryo development and nucleus organization. Part of nuclear pore. Human ortholog(s) of this gene implicated in brain disease; inflammatory myofibroblastic tumor; and multiple myeloma. Is an ortholog of human RANBP2 (RAN binding protein 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0050905Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9848)
DOID:936Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9848)
DOID:9538Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9848)
Molecular_infoCorresponding_CDSF59A2.1a
F59A2.1b
Corresponding_transcriptF59A2.1a.1
F59A2.1a.2
F59A2.1b.1
Other_sequence (54)
Associated_featureWBsf650902
WBsf650903
WBsf650904
WBsf666638
WBsf981431
WBsf991755
WBsf226342
WBsf226343
WBsf226344
Experimental_infoRNAi_result (39)
Expr_patternExpr9022
Expr1014944
Expr1031781
Expr1152834
Expr2014394
Expr2032635
Construct_productWBCnstr00006023
WBCnstr00009708
WBCnstr00009709
WBCnstr00013679
WBCnstr00022447
WBCnstr00042030
AntibodyWBAntibody00002131
Microarray_results (28)
Expression_cluster (179)
Interaction (362)
Map_infoMapIIIPosition-6.97528Error0.012592
PositivePositive_cloneF59A2Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
Reference (15)
RemarkSequence connection from [Askjaer P, Mattaj IW]. krb 13/11/01
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene