WormBase Tree Display for Gene: WBGene00013541

WBGene00013541 SMap: S_parent: Sequence: Y75B8A
  Identity: Version: 2
    Name: CGC_name: lonp-2 Person_evidence: WBPerson1983
      Sequence_name: Y75B8A.4
      Molecular_name: Y75B8A.4
        Y75B8A.4.1
        CE23016
      Other_name: CELE_Y75B8A.4 Accession_evidence: NDB BX284603
      Public_name: lonp-2
    DB_info: Database: AceView gene 3N201
        WormQTL gene WBGene00013541
        WormFlux gene WBGene00013541
        NDB locus_tag CELE_Y75B8A.4
        Panther gene CAEEL|WormBase=WBGene00013541|UniProtKB=Q9XW87
          family PTHR10046
        NCBI gene 176643
        RefSeq protein NM_067176.5
        KEGG KEGG_id 3.4.21.53
        NemaPath KEGG_id 3.4.21.53
        SwissProt UniProtAcc Q9XW87
        TREEFAM TREEFAM_ID TF317215
        UniProt_GCRP UniProtAcc Q9XW87
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 13 Jul 2016 14:54:16 WBPerson2970 Name_change: CGC_name: lonp-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lonp
    Allele (80)
    RNASeq_FPKM (74)
    GO_annotation (26)
    Ortholog (38)
    Paralog: WBGene00008946 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00011264 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00016391 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00014156 Caenorhabditis elegans From_analysis: Panther
      WBGene00018496 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Predicted to enable ATP binding activity; ATP hydrolysis activity; and peptidase activity. Predicted to be involved in protein processing and protein targeting to peroxisome. Predicted to be located in peroxisomal matrix. Is an ortholog of human LONP2 (lon peptidase 2, peroxisomal). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y75B8A.4
    Corresponding_transcript: Y75B8A.4.1
    Other_sequence (19)
    Associated_feature: WBsf645649
      WBsf659601
      WBsf994578
      WBsf225885
      WBsf225886
  Experimental_info: RNAi_result: WBRNAi00037853 Inferred_automatically: RNAi_primary
      WBRNAi00058470 Inferred_automatically: RNAi_primary
      WBRNAi00021453 Inferred_automatically: RNAi_primary
      WBRNAi00006843 Inferred_automatically: RNAi_primary
      WBRNAi00090627 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr437
      Expr15934
      Expr1021718
      Expr1036046
      Expr1161885
      Expr2013248
      Expr2031479
    Drives_construct: WBCnstr00029602
      WBCnstr00042610
    Construct_product: WBCnstr00029602
      WBCnstr00042611
    Microarray_results (19)
    Expression_cluster: WBPaper00033444:BacteriaDiet_regulated
      WBPaper00035073:mitochondria_protein
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:hypodermis_embryo_enriched
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_embryo_enriched
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_embryo_enriched
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00040134:nhr-49(RNAi)_regulated_protein
      WBPaper00040990:PA14_upregulated
      WBPaper00041954:ethanol_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(gk119)_upregulated
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00046121:endoderm_unique
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
      WBPaper00046499:AMPK_regulated
      WBPaper00047132:glp-1(ts)-25C_upregulated
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049018:swsn-2.2(RNAi)_downregulated
      WBPaper00049217:TCER-1_upregulated
      WBPaper00049368:daf-2(e1370)_downregulated
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050080:rbr-2(tm3141)_upregulated
      WBPaper00050121:mir-60(n4947)_upregulated
      WBPaper00050370:dpy-21(e428)_L3_downregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_HighSalt
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050887:Lactoferrin_upregulated
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051039:intestine_enriched
      WBPaper00051257:Levamisole_upregulated
      WBPaper00051388:Glucose-diet_upregulated
      WBPaper00051404:alg-2(ok304)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
      WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
      WBPaper00053814:15C_downregulated_PY79
      WBPaper00054191:H3.3(null)_L1_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056284:ints-4(RNAi)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:hmc_biased
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057041:spc-1(cas971)_downregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057068:ints-4(RNAi)_downregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058725:sftb-1(cer39)_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00058969:RIS_depleted
      WBPaper00059191:hsp-16.2p-LIN-29_downregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059735:glucose_upregulated_lpin-1(RNAi)
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00059839:S.maltophilia_regulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060459:bcat-1(RNAi)_downregulated
      WBPaper00060526:plp-1(ok2155)_downregulated
      WBPaper00060661:hypoxia_upregulated
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061007:X.citri_upregulated
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:Intestine
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061527:C24A3.4_16071-ech-8
      WBPaper00061530:nhr-49(e2144)_downregulated
      WBPaper00061653:alh-4(hj221)_upregulated
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00062590:Aging_downregulated_hypodermis
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064716:paraquat_downregulated
      WBPaper00064871:PA14_upregulated_AWA
      WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065225:nhr-42(tm1375)_upregulated_S.aureus-infected
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
      WBPaper00065835:Day11_vs_Day1_downregulated
      WBPaper00065945:global-rpoa-2(-)_downregulated_transcript
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065984:pals-17(syb3980)_downregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      cgc4489_group_8
      WBPaper00025032:cluster_12
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00028789:PA14_vs_OP50_upregulated_4hr
      WBPaper00034739:N2moreDR1350
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00036286:Pattern_C
      WBPaper00037695:WC_5-day
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00040963:Q200_down
      WBPaper00041002:HQ_3d_2.0mM_Up
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041960:N2_fasting_upregulated_9hto12h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00044091:Bpseudomallei_induced_8h
      WBPaper00044091:Bpseudomallei_induced_12h
      WBPaper00045015:acs-3(ft5)_upregulated
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00048637:lin-35(n745)_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
      WBPaper00055899:nitroguanidine_regulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(143_min)
      [cgc5767]:expression_class_SE
      [cgc5767]:expression_class_SE_pi(143_min)
    Interaction (27)
  Map_info: Map: III Position: 14.9256
    Positive: Positive_clone: Y75B8A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene