WormBase Tree Display for Gene: WBGene00003235

WBGene00003235 SMap: S_parent: Sequence: C52E4
  Identity: Version: 1
    Name: CGC_name: mif-2
      Sequence_name: C52E4.2
      Molecular_name: C52E4.2a
        C52E4.2a.1
        CE08944
        C52E4.2b
        CE44888
        C52E4.2c
        CE46342
        C52E4.2a.2
        C52E4.2b.1
        C52E4.2c.1
      Other_name: CELE_C52E4.2 Accession_evidence: NDB BX284605
      Public_name: mif-2
    DB_info: Database: AceView gene 5M458
        WormQTL gene WBGene00003235
        WormFlux gene WBGene00003235
        NDB locus_tag CELE_C52E4.2
        Panther gene CAEEL|WormBase=WBGene00003235|UniProtKB=Q18785
          family PTHR11954
        NCBI gene 179638
        RefSeq protein NM_001269458.3
            NM_001380779.1
            NM_001380778.1
        SwissProt UniProtAcc Q18785
        TREEFAM TREEFAM_ID TF313853
        TrEMBL UniProtAcc D6R8W7
            G3MU38
        UniProt_GCRP UniProtAcc Q18785
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:31 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mif
    Allele (32)
    RNASeq_FPKM (74)
    GO_annotation: 00062267
      00062268
      00062269
      00062270
    Contained_in_operon: CEOP5308
    Ortholog (31)
    Paralog: WBGene00003234 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003236 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003237 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable cytokine activity and phenylpyruvate tautomerase activity. Predicted to be involved in signal transduction. Predicted to be located in extracellular space. Expressed in body wall musculature; hypodermis; and vulval muscle. Is an ortholog of human DDT (D-dopachrome tautomerase) and DDTL (D-dopachrome tautomerase like). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C52E4.2a
      C52E4.2b
      C52E4.2c
    Corresponding_transcript: C52E4.2a.1
      C52E4.2a.2
      C52E4.2b.1
      C52E4.2c.1
    Other_sequence (17)
    Associated_feature: WBsf653170
      WBsf234599
  Experimental_info: RNAi_result: WBRNAi00012323 Inferred_automatically: RNAi_primary
      WBRNAi00043047 Inferred_automatically: RNAi_primary
      WBRNAi00092922 Inferred_automatically: RNAi_primary
      WBRNAi00064530 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1726
      Expr1728
      Expr1733
      Expr1019184
      Expr1031531
      Expr1147008
      Expr2013557
      Expr2031790
    Drives_construct: WBCnstr00000533
      WBCnstr00010420
      WBCnstr00036170
    Construct_product: WBCnstr00010420
      WBCnstr00036170
    Antibody: WBAntibody00002461
    Microarray_results (21)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00032031:DConiospora_upregulated_cDNA_24h
      WBPaper00032528:L3_enriched
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037682:sma-2_upregulated
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038237:age-1_upregulated_intestine_rescue
      WBPaper00038237:age-1_upregulated_neuron_rescue
      WBPaper00038237:age-1_upregulated_nontransgenic
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044746:aging_downregulated_Day5
      WBPaper00044746:aging_downregulated_HeatShock
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045486:starvation_downregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00048910:mRNA-interacting_protein
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00049942:HeatShock_upregulated_hsf-1(+)
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051265:F4_morc-1(tm6048)_downregulated
      WBPaper00051558:aging_regulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053388:dauer_regulated_Cluster6
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053615:SMO-1_target
      WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00056039:efa-6(tm3124)_downregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056900:PID-3_interacting
      WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_upregulated
      WBPaper00057161:meg-3(tm4259)_meg-4(ax2026)_upregulated_endo-siRNA_targets
      WBPaper00057162:meg-3_meg-4_upregulated_sRNA
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00059895:wounding_downregulated
      WBPaper00059987:Wounding_downregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:Parents_of_Y_DA6_DA7_DA9
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061527:F54D5.3_7003-F54D5.3_7004
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064716:paraquat_downregulated
      WBPaper00064727:daf-2(e1370)_upregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065835:Day5_vs_Day1_downregulated
      WBPaper00065835:Day11_vs_Day1_downregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      cgc4386_cluster_3_5
      cgc4489_group_3
      WBPaper00005124:cholesterol_10-9M_regulated
      WBPaper00025032:cluster_63
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00032062:age_regulated_genes
      WBPaper00032165:differentially_expressed_with_age_medoid_6
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00036286:Pattern_I
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040963:TA300_up
      WBPaper00041002:HF_3d_0.2mM_Up
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00044535:male_downregulated
      WBPaper00045015:nhr-25(RNAi)_downregulated
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      [cgc5767]:cluster_5
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(23_min)
      [cgc5767]:expression_class_ME
    Interaction (15)
  Map_info: Map: V Position: 3.55101 Error: 0.00145
    Positive: Positive_clone: C52E4 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4951
    Pseudo_map_position
  Reference: WBPaper00005003
    WBPaper00032062
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00063976
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene