WormBase Tree Display for Gene: WBGene00003236
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| WBGene00003236 | SMap | S_parent | Sequence | F13G3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | mif-3 | |||||||
| Sequence_name | F13G3.9 | ||||||||
| Molecular_name | F13G3.9 | ||||||||
| F13G3.9.1 | |||||||||
| CE09371 | |||||||||
| Other_name | CELE_F13G3.9 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | mif-3 | ||||||||
| DB_info | Database | AceView | gene | 1H890 | |||||
| WormQTL | gene | WBGene00003236 | |||||||
| WormFlux | gene | WBGene00003236 | |||||||
| NDB | locus_tag | CELE_F13G3.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003236|UniProtKB=P90835 | |||||||
| family | PTHR11954 | ||||||||
| NCBI | gene | 172481 | |||||||
| RefSeq | protein | NM_059668.4 | |||||||
| SwissProt | UniProtAcc | P90835 | |||||||
| TREEFAM | TREEFAM_ID | TF313853 | |||||||
| UniProt_GCRP | UniProtAcc | P90835 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mif | ||||||||
| Allele (15) | |||||||||
| Strain | WBStrain00002099 | ||||||||
| WBStrain00035771 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00049187 | ||||||||
| 00049188 | |||||||||
| 00049189 | |||||||||
| 00049190 | |||||||||
| 00049191 | |||||||||
| 00049192 | |||||||||
| 00049193 | |||||||||
| Contained_in_operon | CEOP1394 | ||||||||
| Ortholog (19) | |||||||||
| Paralog | WBGene00003234 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003235 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003237 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | mif-3 encodes one of four C. elegans proteins with similarity to macrophage migration inhibitory factor (MIF); loss of mif-3 activity via RNAi results in decreased intestinal dipeptide transport and slightly increased fat storage; mif-3 is expressed throughout development, and its transcription is upregulated over 100-fold in dauer larvae; a mif-3::gfp promoter fusion is expressed in body wall and vulval muscles as well as in the pharynx; MIF-3 has also been detected in embryonic nuclei from the 8-cell stage through the comma stage of development. | Paper_evidence | WBPaper00040287 | |||||
| WBPaper00005003 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 21 Oct 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable cytokine activity and phenylpyruvate tautomerase activity. Involved in regulation of lipid storage and regulation of peptide transport. Located in nucleus. Expressed in body wall musculature; pharyngeal muscle cell; and vulval muscle. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F13G3.9 | |||||||
| Corresponding_transcript | F13G3.9.1 | ||||||||
| Other_sequence | CBC05722_1 | ||||||||
| Tcir_isotig19607 | |||||||||
| Tcir_isotig18218 | |||||||||
| Associated_feature | WBsf219740 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00030907 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00003376 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061782 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044543 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090554 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00002874 | ||||||||
| WBCnstr00010419 | |||||||||
| WBCnstr00036169 | |||||||||
| Construct_product | WBCnstr00036169 | ||||||||
| Antibody | WBAntibody00000434 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (82) | |||||||||
| Interaction | WBInteraction000190841 | ||||||||
| WBInteraction000250680 | |||||||||
| WBInteraction000254851 | |||||||||
| WBInteraction000547759 | |||||||||
| Map_info | Map | I | Position | 1.90353 | Error | 0.002921 | |||
| Positive | Positive_clone | F13G3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4489 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005003 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040287 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
