WormBase Tree Display for Gene: WBGene00003834
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WBGene00003834 | SMap | S_parent | Sequence | C15H11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | nxf-1 | |||||||
Sequence_name | C15H11.3 | ||||||||
Molecular_name | C15H11.3 | ||||||||
C15H11.3.1 | |||||||||
CE42865 | |||||||||
Other_name | nfx-1 | Paper_evidence | WBPaper00041879 | ||||||
CELE_C15H11.3 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | nxf-1 | ||||||||
DB_info | Database | AceView | gene | 5O892 | |||||
WormQTL | gene | WBGene00003834 | |||||||
WormFlux | gene | WBGene00003834 | |||||||
NDB | locus_tag | CELE_C15H11.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003834|UniProtKB=Q9XVS7 | |||||||
family | PTHR10662 | ||||||||
NCBI | gene | 191736 | |||||||
RefSeq | protein | NM_001136408.4 | |||||||
TrEMBL | UniProtAcc | B5BM32 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nxf | ||||||||
Allele (69) | |||||||||
Possibly_affected_by | WBVar02158628 | ||||||||
WBVar02158629 | |||||||||
WBVar02158630 | |||||||||
Strain (6) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (13) | |||||||||
Ortholog (50) | |||||||||
Paralog | WBGene00003835 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | nxf-1 encodes a homolog of human TAP protein, a member of the NXF family of shuttling transport receptors for nuclear export of mRNA; binds RNA directly and its function has been shown to be conserved with the NXF family. | Paper_evidence | WBPaper00004473 | |||||
WBPaper00005959 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in mRNA export from nucleus. Located in nuclear envelope; nucleolus; and nucleoplasm. Part of nuclear pore. Is an ortholog of human NXF1 (nuclear RNA export factor 1); NXF2 (nuclear RNA export factor 2); and NXF2B (nuclear RNA export factor 2B). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C15H11.3 | |||||||
Corresponding_CDS_history | C15H11.3a:wp267 | ||||||||
Corresponding_transcript | C15H11.3.1 | ||||||||
Other_sequence | CBC01576_1 | ||||||||
Associated_feature | WBsf653380 | ||||||||
WBsf655610 | |||||||||
WBsf669649 | |||||||||
WBsf669650 | |||||||||
WBsf977345 | |||||||||
WBsf977346 | |||||||||
WBsf977347 | |||||||||
WBsf982047 | |||||||||
WBsf1002004 | |||||||||
WBsf1002005 | |||||||||
WBsf1002006 | |||||||||
WBsf1020837 | |||||||||
WBsf234939 | |||||||||
Experimental_info | RNAi_result | WBRNAi00040618 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00028925 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092211 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00063059 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092212 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00010797 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092210 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00066418 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr9013 | ||||||||
Expr14870 | |||||||||
Expr14871 | |||||||||
Expr14872 | |||||||||
Expr14873 | |||||||||
Expr1027360 | |||||||||
Expr1031807 | |||||||||
Expr1144676 | |||||||||
Expr2014534 | |||||||||
Expr2032773 | |||||||||
Drives_construct | WBCnstr00035845 | ||||||||
WBCnstr00041566 | |||||||||
Construct_product | WBCnstr00035845 | ||||||||
WBCnstr00041566 | |||||||||
Antibody | WBAntibody00002133 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (102) | |||||||||
Interaction (97) | |||||||||
Map_info | Map | V | Position | 6.28588 | Error | 0.001447 | |||
Positive | Positive_clone | C15H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4552 | |||||||
4553 | |||||||||
Pseudo_map_position | |||||||||
Reference (20) | |||||||||
Remark | Sequence connection from [source BK Felber] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Please note that this publication erroneously cited nfx-1. The correct gene is nxf-1 | Paper_evidence | WBPaper00041879 | |||||||
Method | Gene |