WormBase Tree Display for Gene: WBGene00009939

WBGene00009939 SMap: S_parent: Sequence: F52F12
  Identity: Version: 4
    Name: CGC_name: ztf-11 Person_evidence: WBPerson524
            WBPerson1997
      Sequence_name: F52F12.6
      Molecular_name: F52F12.6a
        F52F12.6a.1
        CE24995
        F52F12.6b
        CE46793
        F52F12.6b.1
      Other_name: ekl-2 Paper_evidence: WBPaper00031487
        CELE_F52F12.6 Accession_evidence: NDB BX284601
      Public_name: ztf-11
    DB_info: Database: AceView gene 1K482
        WormQTL gene WBGene00009939
        WormFlux gene WBGene00009939
        NDB locus_tag CELE_F52F12.6
        NCBI gene 172845
        RefSeq protein NM_001264316.3
            NM_001264317.3
        SwissProt UniProtAcc O02274
        TREEFAM TREEFAM_ID TF317299
        UniProt_GCRP UniProtAcc O02274
        OMIM gene 613084
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 18 Jul 2005 13:34:00 WBPerson2970 Name_change: CGC_name: ekl-2
        3 22 Oct 2007 15:16:41 WBPerson2970 Name_change: CGC_name: ztf-11
        4 20 Feb 2008 16:59:39 WBPerson2970 Name_change: Other_name: ztf-11
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ztf
    Allele (70)
    Strain: WBStrain00031537
      WBStrain00030095
      WBStrain00030097
    RNASeq_FPKM (74)
    GO_annotation (17)
    Ortholog (40)
    Paralog: WBGene00010867 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable zinc ion binding activity. Involved in several processes, including negative regulation of transcription by RNA polymerase II; neuron differentiation; and positive regulation of cell differentiation. Located in nucleus. Expressed in g1 and head neurons. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 39. Is an ortholog of human MYT1L (myelin transcription factor 1 like). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0070069 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:7623)
  Molecular_info: Corresponding_CDS: F52F12.6a
      F52F12.6b
    Corresponding_transcript: F52F12.6a.1
      F52F12.6b.1
    Other_sequence: JI169553.1
      Dviv_isotig18198
      Dviv_isotig18199
    Associated_feature: WBsf649529
      WBsf664801
      WBsf664802
      WBsf984844
      WBsf984845
      WBsf984846
      WBsf984847
      WBsf984848
      WBsf984849
      WBsf984850
      WBsf984851
      WBsf984852
      WBsf984853
      WBsf1010450
      WBsf1010451
      WBsf1010452
      WBsf220161
    Gene_product_binds: WBsf977574
      WBsf977576
      WBsf977577
      WBsf977578
      WBsf977579
      WBsf977580
      WBsf977581
      WBsf977582
      WBsf977583
      WBsf977584
      WBsf977585
      WBsf977588
      WBsf977589
      WBsf977590
      WBsf977592
      WBsf977593
      WBsf977594
      WBsf977595
      WBsf977596
      WBsf977598
      WBsf977600
      WBsf977601
      WBsf977603
      WBsf977604
      WBsf977607
      WBsf977608
      WBsf977609
      WBsf977610
      WBsf977611
      WBsf977613
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      WBsf977615
      WBsf977617
      WBsf977619
      WBsf977620
      WBsf977621
      WBsf977623
      WBsf977624
      WBsf977625
      WBsf977626
      WBsf977628
      WBsf977629
      WBsf977630
      WBsf977632
      WBsf977633
      WBsf977634
      WBsf977635
      WBsf977636
      WBsf977637
      WBsf977638
      WBsf977639
      WBsf977641
      WBsf977642
      WBsf977643
      WBsf977644
      WBsf977646
      WBsf977647
      WBsf977648
      WBsf977649
      WBsf977650
      WBsf977651
      WBsf977652
      WBsf977654
      WBsf977655
      WBsf977656
      WBsf977657
      WBsf977658
      WBsf977659
      WBsf977660
      WBsf977661
      WBsf977662
      WBsf977663
      WBsf977664
      WBsf977665
      WBsf977666
      WBsf977667
      WBsf977668
      WBsf977670
      WBsf977671
      WBsf977672
      WBsf977673
      WBsf977674
      WBsf977676
      WBsf977677
      WBsf977679
      WBsf977680
      WBsf977682
      WBsf977683
      WBsf977685
      WBsf977686
      WBsf977687
      WBsf977689
      WBsf977690
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      WBsf977695
      WBsf977697
      WBsf977699
      WBsf977700
      WBsf977701
      WBsf977703
      WBsf977704
      WBsf977706
      WBsf977707
      WBsf977708
      WBsf977711
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      WBsf977713
      WBsf977714
      WBsf977715
      WBsf977717
      WBsf977718
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      WBsf977725
      WBsf977726
      WBsf977727
      WBsf977728
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      WBsf977731
      WBsf977733
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      WBsf977736
      WBsf977737
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      WBsf977740
      WBsf977743
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      WBsf977747
      WBsf977749
      WBsf977750
      WBsf977751
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      WBsf977757
      WBsf977758
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      WBsf977761
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      WBsf977765
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      WBsf977768
      WBsf977769
      WBsf977770
      WBsf977771
      WBsf977773
      WBsf977774
      WBsf977775
      WBsf977777
      WBsf977778
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      WBsf977783
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      WBsf977800
      WBsf977801
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      WBsf977827
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      WBsf977838
      WBsf977840
      WBsf977841
      WBsf977842
      WBsf977843
      WBsf977845
      WBsf977846
      WBsf977847
      WBsf977849
      WBsf977851
      WBsf977852
      WBsf977853
      WBsf977854
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      WBsf977856
      WBsf977857
      WBsf977858
      WBsf977859
      WBsf977860
      WBsf977864
      WBsf977866
      WBsf977867
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      WBsf977869
      WBsf977870
      WBsf977871
      WBsf977873
      WBsf977874
      WBsf977875
      WBsf977876
      WBsf977877
      WBsf977878
      WBsf977879
      WBsf977880
      WBsf977881
      WBsf977882
      WBsf977883
      WBsf977884
      WBsf977885
      WBsf977886
      WBsf977888
      WBsf977889
      WBsf977890
      WBsf977891
      WBsf977893
      WBsf977894
      WBsf977895
      WBsf977896
      WBsf977897
      WBsf977898
      WBsf977899
      WBsf977900
      WBsf977902
      WBsf977903
      WBsf977905
      WBsf977907
      WBsf977908
      WBsf977909
      WBsf977910
      WBsf977911
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      WBsf977934
      WBsf977935
      WBsf977936
      WBsf977938
      WBsf977939
      WBsf977940
      WBsf977941
      WBsf977943
      WBsf977945
      WBsf977946
      WBsf977947
      WBsf977948
      WBsf977949
    Transcription_factor: WBTranscriptionFactor000759
  Experimental_info: RNAi_result: WBRNAi00082504 Inferred_automatically: RNAi_primary
      WBRNAi00003743 Inferred_automatically: RNAi_primary
      WBRNAi00116763 Inferred_automatically: RNAi_primary
      WBRNAi00000286 Inferred_automatically: RNAi_primary
      WBRNAi00048012 Inferred_automatically: RNAi_primary
      WBRNAi00070207 Inferred_automatically: RNAi_primary
      WBRNAi00082618 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr427
      Expr1020528
      Expr1034330
      Expr1151827
      Expr1200080
      Expr1200081
      Expr2018185
      Expr2036322
    Drives_construct: WBCnstr00037854
    Construct_product: WBCnstr00016725
      WBCnstr00018914
      WBCnstr00037854
    Regulate_expr_cluster: WBPaper00057143:ztf-11(RNAi)_downregulated
      WBPaper00057143:ztf-11(RNAi)_upregulated
    Microarray_results (20)
    Expression_cluster (221)
    Interaction (40)
  Map_info: Map: I Position: 4.05133 Error: 0.011125
    Positive: Positive_clone: F52F12 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5407
        5060
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00040002
    WBPaper00055090
    WBPaper00057143
    WBPaper00057179
    WBPaper00061738
    WBPaper00062585
    WBPaper00064339
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene