WormBase Tree Display for Gene: WBGene00009968

WBGene00009968 SMap: S_parent: Sequence: CHROMOSOME_V
  Identity: Version: 3
    Name: CGC_name: fig-1 Person_evidence: WBPerson3410
            WBPerson3085
            WBPerson576
      Sequence_name: F53B7.5
      Molecular_name: F53B7.5a
        F53B7.5a.1
        CE47474
        F53B7.5b
        CE53054
        F53B7.5b.1
      Other_name: CELE_F53B7.5 Accession_evidence: NDB BX284605
      Public_name: fig-1
    DB_info: Database: AceView gene 5L452
        WormQTL gene WBGene00009968
        WormFlux gene WBGene00009968
        NDB locus_tag CELE_F53B7.5
        Panther gene CAEEL|WormBase=WBGene00009968|UniProtKB=G5EGB4
          family PTHR31507
        NCBI gene 179523
        RefSeq protein NM_001129475.3
            NM_001129474.4
        TREEFAM TREEFAM_ID TF315483
        TrEMBL UniProtAcc G5EGB4
            H9G2W3
        UniProt_GCRP UniProtAcc G5EGB4
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 10 Sep 2008 16:37:04 WBPerson2970 Name_change: CGC_name: fig-1
        3 09 Jan 2012 12:38:37 WBPerson4025 Event: Split_into: WBGene00219325
      Split_into: WBGene00219325
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fig
    Allele: WBVar02146523
      WBVar02024297
      WBVar02024298
      WBVar02115452
      WBVar02148050
      WBVar01842369
      WBVar01842370
      WBVar02151999
      WBVar00251023
      WBVar01743262
      WBVar01743263
      WBVar01743264
      WBVar02157904
      WBVar02137074
      WBVar00067839
      WBVar01045925
      WBVar01045926
      WBVar01045927
      WBVar01045928
      WBVar01045929
      WBVar01045930
      WBVar01045931
      WBVar01045932
      WBVar01045933
      WBVar01045934
      WBVar01045935
      WBVar01045936
      WBVar01045937
      WBVar01974738
      WBVar01045938
      WBVar01045939
      WBVar00469779
      WBVar01045940
      WBVar00469780
      WBVar01045941
      WBVar00469781
      WBVar01489484
      WBVar00258450
      WBVar01045942
      WBVar00469782
      WBVar01489485
      WBVar00469783
      WBVar01045943
      WBVar01045944
      WBVar00469784
      WBVar01045945
      WBVar00469785
      WBVar01045946
      WBVar00469786
      WBVar01045947
      WBVar00469787
      WBVar01045948
      WBVar00469788
      WBVar01461641
      WBVar00469789
      WBVar00589346
      WBVar01045949
      WBVar00589348
      WBVar01461642
      WBVar01045950
      WBVar00469790
      WBVar01045951
      WBVar00589349
      WBVar01461644
      WBVar00469791
      WBVar01045952
      WBVar00589350
      WBVar00469792
      WBVar00589352
      WBVar00469793
      WBVar01045953
      WBVar00589353
      WBVar00469794
      WBVar01045954
      WBVar00469795
      WBVar00003195
      WBVar01045955
      WBVar01865325
      WBVar01045956
      WBVar01045957
      WBVar01865326
      WBVar00003200
      WBVar01045958
      WBVar01865327
      WBVar01865328
      WBVar01045959
      WBVar01045960
      WBVar01865329
      WBVar01865330
      WBVar00003205
      WBVar01045961
      WBVar01865331
      WBVar01045962
      WBVar01865332
      WBVar01045963
      WBVar01865333
      WBVar01045964
      WBVar00003210
      WBVar01865334
      WBVar01045965
      WBVar01865335
      WBVar01045966
      WBVar00003215
      WBVar01865336
      WBVar01045967
      WBVar01865337
      WBVar01045968
      WBVar01865338
      WBVar01045969
      WBVar01045970
      WBVar00003220
      WBVar01045971
      WBVar01045972
      WBVar01045973
      WBVar00003225
      WBVar01045974
      WBVar01045975
      WBVar02060907
      WBVar02151916
      WBVar01045976
      WBVar02060908
      WBVar01045977
      WBVar01045978
      WBVar01590146
      WBVar02060909
      WBVar01045979
      WBVar01590147
      WBVar02060910
      WBVar01045980
      WBVar01590148
      WBVar01045981
      WBVar01045982
      WBVar02056296
      WBVar01045983
      WBVar01045984
      WBVar01045985
      WBVar01045986
      WBVar01045987
      WBVar01045988
      WBVar01045989
      WBVar01045990
      WBVar01045991
      WBVar01500208
      WBVar01045992
      WBVar01500209
      WBVar01045993
      WBVar01045994
      WBVar01045995
      WBVar01045996
      WBVar01045997
      WBVar01045998
      WBVar01045999
      WBVar01046000
      WBVar00272463
      WBVar00272464
      WBVar01499316
      WBVar02151961
    Possibly_affected_by: WBVar02157904
    Strain: WBStrain00052693
    RNASeq_FPKM (74)
    GO_annotation: 00019912
    Ortholog (32)
    Paralog (18)
    Structured_description: Concise_description: fig-1 encodes a predicted extracellular protein containing conserved thrombospondin TSP1 domains; FIG-1 function is required cell nonautonomously for sensory organ function as measured by dye filling and behavioral assays; a fig-1::GFP promoter fusion is expressed in amphid and phasmid sheath glial cells from late embryogenesis through adulthood; as fig-1(RNAi) can produce defects at all stages of development and fig-1 mRNA is highly expressed, FIG-1 is likely to be a labile protein that plays a nonstructural role in regulating neuronal function. Paper_evidence: WBPaper00032317
          Curator_confirmed: WBPerson1843
          Date_last_updated: 08 Dec 2009 00:00:00
      Automated_description: Predicted to be located in membrane. Expressed in amphid sheath cell and phasmid sheath cell. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F53B7.5a
      F53B7.5b
    Corresponding_CDS_history: F53B7.5:wp173
      F53B7.5a:wp230
      F53B7.5b:wp270
    Corresponding_transcript: F53B7.5a.1
      F53B7.5b.1
    Other_sequence: ACC12564_1
      SS03471
      Oden_isotig17409
      Acan_isotig04140
      EX536206.1
    Associated_feature: WBsf668676
      WBsf669348
      WBsf1001240
      WBsf1001241
      WBsf1020387
      WBsf234477
      WBsf234478
  Experimental_info: RNAi_result: WBRNAi00091964 Inferred_automatically: RNAi_primary
      WBRNAi00048098 Inferred_automatically: RNAi_primary
      WBRNAi00015486 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr12749
      Expr1016241
      Expr1034342
      Expr1151908
      Expr2011759
      Expr2029997
    Drives_construct (7)
    Construct_product: WBCnstr00005414
      WBCnstr00007446
      WBCnstr00007447
      WBCnstr00007448
      WBCnstr00031777
    Microarray_results (19)
    Expression_cluster (116)
    Interaction: WBInteraction000536407
  Map_info: Map: V Position: 2.87711 Error: 0.003354
    Positive: Positive_clone: F53B7 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031789
    WBPaper00032317
    WBPaper00032771
    WBPaper00039427
    WBPaper00039849
    WBPaper00048088
    WBPaper00049809
    WBPaper00052744
    WBPaper00062520
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene