WormBase Tree Display for Gene: WBGene00003046

WBGene00003046 SMap: S_parent: Sequence: F37H8
  Identity: Version: 2
    Name: CGC_name: lir-3 Person_evidence: WBPerson351
      Sequence_name: F37H8.1
      Molecular_name: F37H8.1
        F37H8.1.1
        CE15994
      Other_name: moag-2 Paper_evidence: WBPaper00050937
        CELE_F37H8.1 Accession_evidence: NDB BX284602
      Public_name: lir-3
    DB_info: Database: AceView gene 2L474
        WormQTL gene WBGene00003046
        WormFlux gene WBGene00003046
        NDB locus_tag CELE_F37H8.1
        NCBI gene 174707
        RefSeq protein NM_063994.7
        SwissProt UniProtAcc O17862
        TREEFAM TREEFAM_ID TF316051
        UniProt_GCRP UniProtAcc O17862
    Species: Caenorhabditis elegans
    History: Version_change (2)
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lir
    Allele: WBVar01499702
      WBVar01394136
      WBVar01478002
      WBVar01498435
      WBVar01311504
      WBVar01311505
      WBVar01400348
      WBVar02151480
      WBVar01498305
      WBVar00767354
      WBVar00767355
      WBVar00767356
      WBVar00767357
      WBVar00767358
      WBVar00767359
      WBVar00767360
      WBVar00767361
      WBVar00767362
      WBVar00767363
      WBVar00767364
      WBVar00767365
      WBVar00767366
      WBVar00249840
      WBVar01498941
      WBVar00377860
      WBVar02148404
      WBVar00377861
    Strain: WBStrain00030541
      WBStrain00030121
    RNASeq_FPKM (74)
    GO_annotation: 00030853
      00030854
      00030855
      00030856
    Ortholog (18)
    Paralog: WBGene00003045 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00003012 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003044 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00010264 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00013350 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00018740 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00018833 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00304808 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: lir-3 encodes a LIN-26-like zinc-finger protein that shares a unique C2H2 motif together with LIR-1, LIR-2 and LIN-26; as loss of lir-3 activity via mutation or RNAi results in no obvious abnormalities, the precise role of lir-3 in C. elegans development and/or behavior is not yet known. Paper_evidence: WBPaper00003532
            WBPaper00003777
          Curator_confirmed: WBPerson1843
            WBPerson567
          Date_last_updated: 05 Dec 2006 00:00:00
      Automated_description: Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus. Expressed in muscle cell; neurons; spermatheca; and vulva. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F37H8.1
    Corresponding_transcript: F37H8.1.1
    Other_sequence: Acan_isotig13863
      Oden_isotig27510
      Dviv_isotig23173
    Associated_feature: WBsf650550
      WBsf989653
      WBsf1013177
      WBsf223905
    Transcription_factor: WBTranscriptionFactor000499
  Experimental_info: RNAi_result: WBRNAi00103343 Inferred_automatically: RNAi_primary
      WBRNAi00031927 Inferred_automatically: RNAi_primary
      WBRNAi00046650 Inferred_automatically: RNAi_primary
      WBRNAi00014507 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr7545
      Expr13293
      Expr1015599
      Expr1031430
      Expr1150520
      Expr1200095
      Expr1200096
      Expr2013226
      Expr2031457
    Drives_construct: WBCnstr00009839
      WBCnstr00012690
      WBCnstr00036263
    Construct_product: WBCnstr00021746
      WBCnstr00036263
    Regulate_expr_cluster: WBPaper00050937:lir-3(pk2183)_downregulated
      WBPaper00050937:lir-3(pk2183)_upregulated
    Microarray_results (18)
    Expression_cluster (70)
    Interaction (12)
  Map_info: Map: II Position: 3.34231 Error: 0.003342
    Positive: Positive_clone: F37H8 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4599
    Pseudo_map_position
  Reference: WBPaper00003532
    WBPaper00003777
    WBPaper00027309
    WBPaper00048022
    WBPaper00050937
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene