WormBase Tree Display for Gene: WBGene00001838

WBGene00001838 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: Y51H1A
  Identity: Version: 2
    Name: CGC_name: hda-10 Person_evidence: WBPerson260
            WBPerson2136
      Sequence_name: Y51H1A.5
      Molecular_name: Y51H1A.5
        Y51H1A.5.1
        CE24411
      Other_name: CELE_Y51H1A.5 Accession_evidence: NDB BX284602
      Public_name: hda-10
    DB_info: Database: AceView gene 2O177
        WormQTL gene WBGene00001838
        WormFlux gene WBGene00001838
        NDB locus_tag CELE_Y51H1A.5
        Panther gene CAEEL|WormBase=WBGene00001838|UniProtKB=Q9U266
          family PTHR45634
        NCBI gene 175039
        RefSeq protein NM_064509.7
        TREEFAM TREEFAM_ID TF106173
        TrEMBL UniProtAcc Q9U266
        UniProt_GCRP UniProtAcc Q9U266
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:25 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 12 Apr 2012 16:15:43 WBPerson2970 Name_change: CGC_name: hda-10
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hda
    Allele: WBVar00094347 Inferred_automatically: From strain object: RB2416
      WBVar01983402
      WBVar01983403
      WBVar01983404
      WBVar02018386
      WBVar01499702
      WBVar02018387
      WBVar02018388
      WBVar02076763
      WBVar01391734
      WBVar02078073
      WBVar02029526
      WBVar02029527
      WBVar02123371
      WBVar01395176
      WBVar02029528
      WBVar01395177
      WBVar02029529
      WBVar01395180
      WBVar02029530
      WBVar01785031
      WBVar01498435
      WBVar02085106
      WBVar01391756
      WBVar02103144
      WBVar02103145
      WBVar01836790
      WBVar00235081
      WBVar01912357
      WBVar01391767
      WBVar00383804
      WBVar00383805
      WBVar00383806
      WBVar00383807
      WBVar01950247
      WBVar00383808
      WBVar00383809
      WBVar01950248
      WBVar01950249
      WBVar00383810
      WBVar01950250
      WBVar00383811
      WBVar00383812
      WBVar00383813
      WBVar00383814
      WBVar01391778
      WBVar00383815
      WBVar02072323
      WBVar00383816
      WBVar00785180
      WBVar00785181
      WBVar00383817
      WBVar01562653
      WBVar00785182
      WBVar01562654
      WBVar01414737
      WBVar00785183
      WBVar00785184
      WBVar01802068
      WBVar01562655
      WBVar02040822
      WBVar01562656
      WBVar00785185
      WBVar00785186
      WBVar02040823
      WBVar00785187
      WBVar02040824
      WBVar00785188
      WBVar02040825
      WBVar00785189
      WBVar01391789
      WBVar00785190
      WBVar00251787
      WBVar00785191
      WBVar00785192
      WBVar00785193
      WBVar00277861
      WBVar00785194
      WBVar00785195
      WBVar00785196
      WBVar01696360
      WBVar00785197
      WBVar01251728
      WBVar00785198
      WBVar00785199
      WBVar01251733
      WBVar00785200
      WBVar00247504
      WBVar01251734
      WBVar00785201
      WBVar01937087
      WBVar01937088
      WBVar00785202
      WBVar01251735
      WBVar00785203
      WBVar01937091
      WBVar01251736
      WBVar01251738
      WBVar00785204
      WBVar00785205
      WBVar01251739
      WBVar01251741
      WBVar00785206
      WBVar01540027
      WBVar01251742
      WBVar00785207
      WBVar02079447
      WBVar01251744
      WBVar01766995
      WBVar00785208
      WBVar01540028
      WBVar00785209
      WBVar01540029
      WBVar01766996
      WBVar01251745
      WBVar01540030
      WBVar01251746
      WBVar01766997
      WBVar00785210
      WBVar01264584
      WBVar01721299
      WBVar01251747
      WBVar00785211
      WBVar00785212
      WBVar01721300
      WBVar00785213
      WBVar01895584
      WBVar01721301
      WBVar00785214
      WBVar01895585
      WBVar01721302
      WBVar01895586
      WBVar00785215
      WBVar01721303
      WBVar01895587
      WBVar00785216
      WBVar01721304
      WBVar00785217
      WBVar01721305
      WBVar00785218
      WBVar01721306
      WBVar00785219
      WBVar01264595
      WBVar01721307
      WBVar01721309
      WBVar00785220
      WBVar00785221
      WBVar01721310
      WBVar01721311
      WBVar02067351
      WBVar00240492
      WBVar02067352
      WBVar02117018
      WBVar02124563
      WBVar01264606
      WBVar01264617
      WBVar01898586
      WBVar01898587
      WBVar02112431
      WBVar02075195
      WBVar01994431
      WBVar01994432
      WBVar01994433
      WBVar01994434
      WBVar01994435
      WBVar01478482
      WBVar01478483
      WBVar01478484
      WBVar01817792
      WBVar01961012
      WBVar01478485
      WBVar01961013
      WBVar01999085
      WBVar01478486
      WBVar01318420
      WBVar01318422
      WBVar01478487
      WBVar01478488
      WBVar01318424
      WBVar01318425
      WBVar01318427
      WBVar01318429
      WBVar01318430
      WBVar01318431
      WBVar01318434
      WBVar01318435
      WBVar00556209
      WBVar00556210
      WBVar00011258
      WBVar00011263
      WBVar00011268
      WBVar00011273
      WBVar01606256
      WBVar01606257
      WBVar02121859
      WBVar01606258
      WBVar01606259
      WBVar00011278
      WBVar01606260
      WBVar01606261
      WBVar01498941
      WBVar01606262
      WBVar00011283
      WBVar01441942
      WBVar00011288
      WBVar01441943
      WBVar01643186
      WBVar01441944
      WBVar01643187
      WBVar01441945
      WBVar02109907
      WBVar01643188
      WBVar00011293
      WBVar01643189
      WBVar01643190
      WBVar02131096
      WBVar01643191
      WBVar00011298
      WBVar01400848
      WBVar00011303
      WBVar01406796
      WBVar01406797
      WBVar00011308
      WBVar01406800
      WBVar00011313
      WBVar02120962
      WBVar01391723
      WBVar00231765
      WBVar00312769
      WBVar00011318
      WBVar01983400
      WBVar00231766
      WBVar01983401
      WBVar00312770
    Strain: WBStrain00033091
    RNASeq_FPKM (74)
    GO_annotation: 00098749
      00098750
      00098751
      00098752
      00098753
      00098754
    Contained_in_operon: CEOP2620
    Ortholog (36)
    Paralog: WBGene00001837 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00009663 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018319 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00219378 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001834 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00001835 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00001836 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00007953 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00009657 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable histone deacetylase activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be part of histone deacetylase complex. Is an ortholog of human HDAC10 (histone deacetylase 10). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y51H1A.5
    Corresponding_transcript: Y51H1A.5.1
    Other_sequence (19)
    Associated_feature: WBsf222407
      WBsf222408
    Transcription_factor: WBTranscriptionFactor000359
  Experimental_info: RNAi_result: WBRNAi00020881 Inferred_automatically: RNAi_primary
      WBRNAi00091923 Inferred_automatically: RNAi_primary
      WBRNAi00086544 Inferred_automatically: RNAi_primary
      WBRNAi00091474 Inferred_automatically: RNAi_primary
      WBRNAi00062997 Inferred_automatically: RNAi_primary
      WBRNAi00075448 Inferred_automatically: RNAi_primary
      WBRNAi00057169 Inferred_automatically: RNAi_primary
      WBRNAi00037360 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020011
      Expr1031083
      Expr1160607
      Expr2012382
      Expr2030618
    Microarray_results (20)
    Expression_cluster (83)
    Interaction (15)
  Map_info: Map: II Position: 20.86 Error: 0.119823
    Positive: Positive_clone: Y51H1A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00026289
    WBPaper00027148
    WBPaper00027309
    WBPaper00029005
    WBPaper00031307
    WBPaper00032356
    WBPaper00038372
    WBPaper00055090
    WBPaper00065308
  Remark: NCBI lists Y51H1A.5 as hda-4, which has also been applied to C10E2.3. The name hda-6 avoids confusion, and reflects similarity to Dm HDAC6 and Mm HD6 CGC_data_submission
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene