WormBase Tree Display for Gene: WBGene00000482
expand all nodes | collapse all nodes | view schema
WBGene00000482 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | chd-3 | Person_evidence | WBPerson8 | |||||
Sequence_name | T14G8.1 | ||||||||
Molecular_name | T14G8.1 | ||||||||
T14G8.1.1 | |||||||||
CE03657 | |||||||||
Other_name | CELE_T14G8.1 | Accession_evidence | NDB | BX284606 | |||||
Public_name | chd-3 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | chd | ||||||||
Allele | WBVar02148775 | ||||||||
WBVar01499887 | |||||||||
WBVar01499519 | |||||||||
WBVar01988054 | |||||||||
WBVar02151611 | |||||||||
WBVar01499888 | |||||||||
WBVar01499710 | |||||||||
WBVar01494930 | |||||||||
WBVar00092859 | |||||||||
WBVar02088423 | |||||||||
WBVar01691166 | |||||||||
WBVar01691167 | |||||||||
WBVar01954871 | |||||||||
WBVar01691168 | |||||||||
WBVar01197502 | |||||||||
WBVar01197503 | |||||||||
WBVar01197504 | |||||||||
WBVar01197505 | |||||||||
WBVar01197506 | |||||||||
WBVar01197507 | |||||||||
WBVar01197508 | |||||||||
WBVar00145118 | |||||||||
WBVar01197509 | |||||||||
WBVar01197510 | |||||||||
WBVar01197511 | |||||||||
WBVar01197512 | |||||||||
WBVar01197513 | |||||||||
WBVar01197514 | |||||||||
WBVar01197515 | |||||||||
WBVar01197516 | |||||||||
WBVar01787479 | |||||||||
WBVar01197517 | |||||||||
WBVar01787480 | |||||||||
WBVar01197518 | |||||||||
WBVar01197519 | |||||||||
WBVar01197520 | |||||||||
WBVar01197521 | |||||||||
WBVar01197522 | |||||||||
WBVar01197523 | |||||||||
WBVar01197524 | |||||||||
WBVar01197525 | |||||||||
WBVar01197526 | |||||||||
WBVar01197527 | |||||||||
WBVar01197528 | |||||||||
WBVar01197529 | |||||||||
WBVar01197530 | |||||||||
WBVar01197531 | |||||||||
WBVar02009319 | |||||||||
WBVar01197532 | |||||||||
WBVar01197533 | |||||||||
WBVar01197534 | |||||||||
WBVar01197535 | |||||||||
WBVar01197536 | |||||||||
WBVar01197537 | |||||||||
WBVar01197538 | |||||||||
WBVar01197539 | |||||||||
WBVar01197540 | |||||||||
WBVar01197541 | |||||||||
WBVar01197542 | |||||||||
WBVar01197543 | |||||||||
WBVar01197544 | |||||||||
WBVar01197545 | |||||||||
WBVar01197546 | |||||||||
WBVar01197547 | |||||||||
WBVar01197548 | |||||||||
WBVar01197549 | |||||||||
WBVar01197550 | |||||||||
WBVar01197551 | |||||||||
WBVar01197552 | |||||||||
WBVar01197553 | |||||||||
WBVar01197554 | |||||||||
WBVar01197555 | |||||||||
WBVar01197556 | |||||||||
WBVar01197557 | |||||||||
WBVar01197558 | |||||||||
WBVar01197559 | |||||||||
WBVar00520566 | |||||||||
WBVar00520567 | |||||||||
WBVar00520568 | |||||||||
WBVar00520569 | |||||||||
WBVar00520570 | |||||||||
WBVar00520571 | |||||||||
WBVar00520572 | |||||||||
WBVar00520573 | |||||||||
WBVar00520574 | |||||||||
WBVar01981475 | |||||||||
WBVar00520575 | |||||||||
WBVar00520576 | |||||||||
WBVar00520577 | |||||||||
WBVar00520578 | |||||||||
WBVar02093465 | |||||||||
WBVar00520579 | |||||||||
WBVar00520580 | |||||||||
WBVar00520581 | |||||||||
WBVar00520582 | |||||||||
WBVar00520583 | |||||||||
WBVar00520584 | |||||||||
WBVar00520585 | |||||||||
WBVar00520586 | |||||||||
WBVar01703436 | |||||||||
WBVar01820555 | |||||||||
WBVar01900254 | |||||||||
WBVar01835203 | |||||||||
WBVar01835204 | |||||||||
WBVar00255744 | |||||||||
WBVar01571928 | |||||||||
WBVar01571929 | |||||||||
WBVar01571930 | |||||||||
WBVar01571931 | |||||||||
WBVar01759688 | |||||||||
WBVar01759689 | |||||||||
WBVar01621922 | |||||||||
WBVar02121507 | |||||||||
WBVar01817099 | |||||||||
WBVar02121508 | |||||||||
WBVar01817100 | |||||||||
WBVar01817101 | |||||||||
WBVar01817102 | |||||||||
WBVar00083644 | |||||||||
WBVar01498960 | |||||||||
WBVar01500067 | |||||||||
Strain | WBStrain00032145 | ||||||||
WBStrain00008565 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (36) | |||||||||
Ortholog (44) | |||||||||
Paralog (19) | |||||||||
Structured_description | Concise_description | chd-3 encodes a PHD-finger SNF2 family member containing a chromo domain and a C-terminal helicase domain that affects Notch-dependent vulval development; expressed in virtually all embryonic cells and in many larval nuclei. | Paper_evidence | WBPaper00004171 | |||||
WBPaper00004491 | |||||||||
WBPaper00018132 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable several functions, including ATP hydrolysis activity; ATP-dependent activity, acting on DNA; and chromatin binding activity. Involved in cell fate determination; negative regulation of Ras protein signal transduction; and negative regulation of vulval development. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Expressed in several structures, including distal tip cell; pharynx; ventral nerve cord; vulva; and vulval precursor cell. Human ortholog(s) of this gene implicated in gastrointestinal system cancer (multiple); lung adenocarcinoma; and lymphoma. Is an ortholog of human CHD3 (chromodomain helicase DNA binding protein 3). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed (2) | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:9256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1919) | ||||
DOID:1993 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1919) | ||||||
DOID:3910 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1919) | ||||||
DOID:1324 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1919) | ||||||
DOID:234 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1919) | ||||||
DOID:0060058 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1919) | ||||||
DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16816,HGNC:1919) | ||||||
Molecular_info | Corresponding_CDS | T14G8.1 | |||||||
Corresponding_transcript | T14G8.1.1 | ||||||||
Other_sequence (39) | |||||||||
Associated_feature | WBsf655713 | ||||||||
WBsf671155 | |||||||||
WBsf671156 | |||||||||
WBsf671157 | |||||||||
WBsf1007448 | |||||||||
WBsf1024138 | |||||||||
WBsf238087 | |||||||||
Experimental_info | RNAi_result | WBRNAi00018728 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00053345 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00075564 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00070008 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00081570 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00113476 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00035580 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1044 | ||||||||
Expr9223 | |||||||||
Expr1020503 | |||||||||
Expr1030284 | |||||||||
Expr1156930 | |||||||||
Expr2009956 | |||||||||
Expr2028196 | |||||||||
Drives_construct | WBCnstr00010045 | ||||||||
WBCnstr00013809 | |||||||||
WBCnstr00037504 | |||||||||
WBCnstr00038090 | |||||||||
Construct_product | WBCnstr00037504 | ||||||||
WBCnstr00038090 | |||||||||
Regulate_expr_cluster (8) | |||||||||
Antibody | WBAntibody00002259 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (184) | |||||||||
Interaction (66) | |||||||||
Map_info | Map | X | Position | 8.51882 | Error | 0.073253 | |||
Positive | Positive_clone | T14G8 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4215 | |||||||
4883 | |||||||||
5508 | |||||||||
Pseudo_map_position | |||||||||
Reference (38) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |