WormBase Tree Display for Gene: WBGene00000496
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| WBGene00000496 | SMap | S_parent | Sequence | T25G3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | chs-1 | Person_evidence | WBPerson50 | |||||
| Sequence_name | T25G3.2 | ||||||||
| Molecular_name | T25G3.2 | ||||||||
| T25G3.2.1 | |||||||||
| CE39183 | |||||||||
| T25G3.2.2 | |||||||||
| Other_name | chi-1 | CGC_data_submission | |||||||
| chs-2 | |||||||||
| CELE_T25G3.2 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | chs-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 05 Jul 2004 10:20:16 | WBPerson1971 | Name_change | CGC_name | chs-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | chs | ||||||||
| Allele | WBVar00092388 | Inferred_automatically | From strain object: RB1189 | ||||||
| WBVar02072860 | |||||||||
| WBVar00650299 | |||||||||
| WBVar01432112 | |||||||||
| WBVar00650300 | |||||||||
| WBVar00650301 | |||||||||
| WBVar01432113 | |||||||||
| WBVar01432114 | |||||||||
| WBVar00650302 | |||||||||
| WBVar00650303 | |||||||||
| WBVar00650304 | |||||||||
| WBVar00650305 | |||||||||
| WBVar00650306 | |||||||||
| WBVar00650307 | |||||||||
| WBVar00650308 | |||||||||
| WBVar00650309 | |||||||||
| WBVar00650310 | |||||||||
| WBVar00650311 | |||||||||
| WBVar00650312 | |||||||||
| WBVar00650313 | |||||||||
| WBVar00650314 | |||||||||
| WBVar00650315 | |||||||||
| WBVar00650316 | |||||||||
| WBVar00650317 | |||||||||
| WBVar00650318 | |||||||||
| WBVar00650319 | |||||||||
| WBVar00650320 | |||||||||
| WBVar00650321 | |||||||||
| WBVar00650322 | |||||||||
| WBVar00650323 | |||||||||
| WBVar00650324 | |||||||||
| WBVar00650325 | |||||||||
| WBVar00650326 | |||||||||
| WBVar00650327 | |||||||||
| WBVar02151673 | |||||||||
| WBVar00650328 | |||||||||
| WBVar00537518 | |||||||||
| WBVar02127854 | |||||||||
| WBVar02127855 | |||||||||
| WBVar02156747 | |||||||||
| WBVar01345357 | |||||||||
| WBVar01499786 | |||||||||
| WBVar01499054 | |||||||||
| WBVar01420011 | |||||||||
| WBVar00154387 | |||||||||
| WBVar00154388 | |||||||||
| WBVar00338440 | |||||||||
| WBVar00338441 | |||||||||
| WBVar00338442 | |||||||||
| WBVar00338443 | |||||||||
| WBVar00338444 | |||||||||
| WBVar00338445 | |||||||||
| WBVar00338446 | |||||||||
| WBVar00338447 | |||||||||
| WBVar00338448 | |||||||||
| WBVar00338449 | |||||||||
| WBVar01498959 | |||||||||
| Strain | WBStrain00031890 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (26) | |||||||||
| Contained_in_operon | CEOP1400 | ||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00000497 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | chs-1 encodes a chitin synthase, paralogous to CHS-2; chs-1 is requiredfor embryonic chitin synthesis, eggshell synthesis and osmoticintegrity, error-free chromosomal segregation during meiosis, polar bodyextrusion, association of the sperm pronucleus/centrosome complex (SPCC)with the early embryonic cortex, localization of PAR-2 in early embryos,posterior localization of P granules or PIE-1, and pseudocleavage; CHS-1is also, independently of chitin synthesis, required for normallocalization of MBK-2 to cortex and punctae in early embryos; CHS-1 isdispensable for synthesis of pharyngeal cuticle, since chs-1(ok1120)mutants have it normally; CHS-1 localizes to the oocyte plasma membrane and .cell cortex | Paper_evidence | WBPaper00004881 | |||||
| WBPaper00006390 | |||||||||
| WBPaper00012846 | |||||||||
| WBPaper00026721 | |||||||||
| WBPaper00028588 | |||||||||
| WBPaper00029233 | |||||||||
| WBPaper00031014 | |||||||||
| WBPaper00035426 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 16 Nov 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable chitin synthase activity. Involved in cell wall chitin biosynthetic process; eggshell formation; and positive regulation of protein localization to cell cortex. Located in cell cortex and plasma membrane. Expressed in Psub1. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T25G3.2 | |||||||
| Corresponding_CDS_history | T25G3.2:wp149 | ||||||||
| Corresponding_transcript | T25G3.2.1 | ||||||||
| T25G3.2.2 | |||||||||
| Other_sequence (54) | |||||||||
| Associated_feature | WBsf643461 | ||||||||
| WBsf643462 | |||||||||
| WBsf656537 | |||||||||
| WBsf656538 | |||||||||
| WBsf218023 | |||||||||
| WBsf218024 | |||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr3655 | ||||||||
| Expr4906 | |||||||||
| Expr11042 | |||||||||
| Expr14401 | |||||||||
| Expr1011456 | |||||||||
| Expr1030292 | |||||||||
| Expr1157706 | |||||||||
| Expr2009999 | |||||||||
| Expr2028240 | |||||||||
| Drives_construct | WBCnstr00011576 | ||||||||
| WBCnstr00037497 | |||||||||
| Construct_product | WBCnstr00001287 | ||||||||
| WBCnstr00019030 | |||||||||
| WBCnstr00037497 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (168) | |||||||||
| Interaction (188) | |||||||||
| Map_info | Map | I | Position | 2.13842 | Error | 0.012536 | |||
| Positive | Positive_clone | T25G3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4887 | |||||||
| 5298 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004881 | ||||||||
| WBPaper00010668 | |||||||||
| WBPaper00010809 | |||||||||
| WBPaper00026113 | |||||||||
| WBPaper00026721 | |||||||||
| WBPaper00027938 | |||||||||
| WBPaper00028588 | |||||||||
| WBPaper00029024 | |||||||||
| WBPaper00030694 | |||||||||
| WBPaper00031014 | |||||||||
| WBPaper00031064 | |||||||||
| WBPaper00031129 | |||||||||
| WBPaper00035426 | |||||||||
| WBPaper00036882 | |||||||||
| WBPaper00037715 | |||||||||
| WBPaper00041423 | |||||||||
| WBPaper00045573 | |||||||||
| WBPaper00046691 | |||||||||
| WBPaper00047153 | |||||||||
| WBPaper00052117 | |||||||||
| WBPaper00058103 | |||||||||
| WBPaper00062623 | |||||||||
| WBPaper00064315 | |||||||||
| Remark | Gene was renamed from chi-1 to chs-1 at request of CGC, note that the other name 'chs-2' is from the Brugia malayi ortholog...this ortholog may be renamed in the future to clarify the situation. | CGC_data_submission | |||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
