WormBase Tree Display for Gene: WBGene00006928

WBGene00006928 SMap: S_parent: Sequence: CHROMOSOME_X
  Identity: Version: 1
    Name: CGC_name: vit-4 Person_evidence: WBPerson71
      Sequence_name: F59D8.2
      Molecular_name: F59D8.2
        F59D8.2.1
        CE26817
      Other_name: F59D8.a Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        F59D8.b Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_F59D8.2 Accession_evidence: NDB BX284606
      Public_name: vit-4
    DB_info: Database: AceView gene XE176
        WormQTL gene WBGene00006928
        WormFlux gene WBGene00006928
        NDB locus_tag CELE_F59D8.2
        Panther gene CAEEL|WormBase=WBGene00006928|UniProtKB=P18947
          family PTHR23345
        NCBI gene 180646
        RefSeq protein NM_076211.8
        SwissProt UniProtAcc P18947
        TREEFAM TREEFAM_ID TF332911
        UniProt_GCRP UniProtAcc P18947
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:43 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vit
    Allele: WBVar02123553
      WBVar02121347
      WBVar01498609
      WBVar01134655
      WBVar01134656
      WBVar01134657
      WBVar01134658
      WBVar01134659
      WBVar00499352
      WBVar01134660
      WBVar00499353
      WBVar01134661
      WBVar01134662
      WBVar00094069
      WBVar00499354
      WBVar01134663
      WBVar00499355
      WBVar01134664
      WBVar00499356
      WBVar01134665
      WBVar00499357
      WBVar00499358
      WBVar01134666
      WBVar01134667
      WBVar00499359
      WBVar01134668
      WBVar01134669
      WBVar02148560
      WBVar01498854
      WBVar01814065
      WBVar01499636
      WBVar00297782
      WBVar00309410
      WBVar02122052
      WBVar00304735
      WBVar01500067
    Legacy_information: Structural gene for vitellogenin yp170A; adjacent to vit-3.
      [C.elegansII] NMK. Encodes vitellogenin yp170A (95% identical to VIT-5). Gene adjacent and nearly identical to vit-3. [Speith et al. 1985b; BL]
    Strain: WBStrain00032883
      WBStrain00047209
    RNASeq_FPKM (74)
    GO_annotation: 00039636
      00039637
      00039638
      00039639
      00115040
      00115041
    Ortholog (92)
    Paralog: WBGene00006925 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006926 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006927 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00006930 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006929 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable lipid transporter activity. Predicted to be involved in lipid transport. Predicted to be located in extracellular region. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F59D8.2
    Corresponding_transcript: F59D8.2.1
    Other_sequence (125)
    Associated_feature: WBsf1004666
      WBsf237187
  Experimental_info: RNAi_result: WBRNAi00049182 Inferred_automatically: RNAi_primary
      WBRNAi00095289 Inferred_automatically: RNAi_primary
      WBRNAi00015784 Inferred_automatically: RNAi_primary
      WBRNAi00063215 Inferred_automatically: RNAi_primary
      WBRNAi00016102 Inferred_automatically: RNAi_primary
      WBRNAi00095294 Inferred_automatically: RNAi_primary
      WBRNAi00095274 Inferred_automatically: RNAi_primary
      WBRNAi00095292 Inferred_automatically: RNAi_primary
      WBRNAi00112325 Inferred_automatically: RNAi_primary
      WBRNAi00092262 Inferred_automatically: RNAi_primary
      WBRNAi00039648 Inferred_automatically: RNAi_primary
      WBRNAi00095271 Inferred_automatically: RNAi_primary
      WBRNAi00112328 Inferred_automatically: RNAi_primary
      WBRNAi00016105 Inferred_automatically: RNAi_primary
      WBRNAi00112331 Inferred_automatically: RNAi_primary
      WBRNAi00095270 Inferred_automatically: RNAi_primary
      WBRNAi00085930 Inferred_automatically: RNAi_primary
      WBRNAi00016101 Inferred_automatically: RNAi_primary
      WBRNAi00112327 Inferred_automatically: RNAi_primary
      WBRNAi00016103 Inferred_automatically: RNAi_primary
      WBRNAi00112329 Inferred_automatically: RNAi_primary
      WBRNAi00085928 Inferred_automatically: RNAi_primary
      WBRNAi00090679 Inferred_automatically: RNAi_primary
      WBRNAi00095296 Inferred_automatically: RNAi_primary
      WBRNAi00085926 Inferred_automatically: RNAi_primary
      WBRNAi00095293 Inferred_automatically: RNAi_primary
      WBRNAi00085927 Inferred_automatically: RNAi_primary
      WBRNAi00095297 Inferred_automatically: RNAi_primary
      WBRNAi00112330 Inferred_automatically: RNAi_primary
      WBRNAi00095291 Inferred_automatically: RNAi_primary
      WBRNAi00092261 Inferred_automatically: RNAi_primary
      WBRNAi00112326 Inferred_automatically: RNAi_primary
      WBRNAi00016104 Inferred_automatically: RNAi_primary
      WBRNAi00008335 Inferred_automatically: RNAi_primary
      WBRNAi00095275 Inferred_automatically: RNAi_primary
      WBRNAi00095290 Inferred_automatically: RNAi_primary
      WBRNAi00016106 Inferred_automatically: RNAi_primary
      WBRNAi00063214 Inferred_automatically: RNAi_primary
      WBRNAi00085925 Inferred_automatically: RNAi_primary
      WBRNAi00095657 Inferred_automatically: RNAi_primary
      WBRNAi00039650 Inferred_automatically: RNAi_primary
      WBRNAi00112324 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr16163
      Expr1152928
      Expr2036139
    Drives_construct: WBCnstr00034092
    Construct_product: WBCnstr00034092
    Microarray_results (17)
    Expression_cluster (389)
    Interaction (61)
  Map_info: Map: X Position: -10.0749 Error: 0.015222
    Positive: Positive_clone: F59D8 Inferred_automatically: From sequence, transcript, pseudogene data
        YOLK3-8
    Pseudo_map_position
  Reference (26)
  Remark: F56B6.a changed to overlapping F59D8.2 by J.Spieth [sdm 0103]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene