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WormBase Tree Display for Gene: WBGene00000005

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Name Class

WBGene00000005EvidenceAuthor_evidenceVeljkovic E
Verrey F
SMapS_parentSequenceT13A10
IdentityVersion1
NameCGC_nameaat-4
Sequence_nameT13A10.10
Molecular_nameT13A10.10a
T13A10.10a.1
CE35008
T13A10.10b
Other_nameCELE_T13A10.10Accession_evidenceNDBBX284604
Public_nameaat-4
DB_infoDatabaseWormQTLgeneWBGene00000005
WormFluxgeneWBGene00000005
NDBlocus_tagCELE_T13A10.10
PanthergeneCAEEL|WormBase=WBGene00000005|UniProtKB=Q7YXH5
familyPTHR11785
NCBIgene177388
RefSeqproteinNR_131543.1
NM_001028211.4
TrEMBLUniProtAccQ7YXH5
UniProt_GCRPUniProtAccQ7YXH5
RNAcentralURSidURS00002346CF
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:19WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classaat
AlleleWBVar01966374
WBVar01966375
WBVar01966376
WBVar01966377
WBVar00426670
WBVar00426671
WBVar00426672
WBVar00426673
WBVar00189467
WBVar00189468
WBVar00189469
WBVar00189470
WBVar00189471
WBVar00189472
WBVar01728913
WBVar00189473
WBVar00189474
WBVar01581235
WBVar01581236
WBVar00189475
WBVar00189476
WBVar01581237
WBVar00189477
WBVar01581238
WBVar00189478
WBVar01581239
WBVar01581240
WBVar00189479
WBVar01581241
WBVar00189480
WBVar00189481
WBVar01581242
WBVar00189482
WBVar01581243
WBVar01581244
WBVar00189483
WBVar01581245
WBVar00189484
WBVar01581246
WBVar00189485
WBVar00189486
WBVar01581247
WBVar00189487
WBVar01581248
WBVar01581249
WBVar00189488
WBVar00189489
WBVar01499395
WBVar01581250
WBVar01499396
WBVar00189490
WBVar01581251
WBVar00189491
WBVar01581252
WBVar01581253
WBVar00189492
WBVar01581254
WBVar00189493
WBVar01581255
WBVar00189494
WBVar01581256
WBVar00189495
WBVar01581257
WBVar00189496
WBVar01581258
WBVar00189497
WBVar01581259
WBVar00189498
WBVar01581260
WBVar00189499
WBVar01581261
WBVar00189500
WBVar01581262
WBVar00189501
WBVar01581263
WBVar00189502
WBVar01581264
WBVar00189503
WBVar00189504
WBVar01581265
WBVar00189505
WBVar01581266
WBVar01581267
WBVar00189506
WBVar01581268
WBVar00189507
WBVar00189508
WBVar01581269
WBVar00189509
WBVar01581270
WBVar01581271
WBVar01581272
WBVar01581273
WBVar01499633
WBVar01668774
WBVar02090013
WBVar02090014
WBVar00572754
WBVar00572755
WBVar00572757
WBVar00572758
WBVar00572760
WBVar00572764
WBVar00572765
WBVar00572766
WBVar00572768
WBVar01702931
WBVar00572772
WBVar00572773
WBVar00572774
WBVar00572775
WBVar00915097
WBVar00572776
WBVar00915098
WBVar00915099
WBVar00572778
WBVar00915100
WBVar00572786
WBVar00915101
WBVar00915102
WBVar00915103
WBVar00915104
WBVar00915105
WBVar00915106
WBVar00915107
WBVar00915108
WBVar01500245
WBVar00915109
WBVar00915110
WBVar00915111
WBVar00915112
WBVar00915113
RNASeq_FPKM (74)
GO_annotation00082895
00082896
00082897
00082898
00082899
00106523
00106524
00106525
Ortholog (32)
ParalogWBGene00000002Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000003Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000007Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000008Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000010Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00000009Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000006Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000004Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00013159Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015197Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00016806Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017747Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionaat-4 encodes a predicted amino acid transporter catalytic subunit; unlike catalytic subunits in other organisms, however, AAT-4 does not contain the highly conserved cysteine residue known to facilitate covalent interaction with a glycoprotein subunit, suggesting that AAT-4 does not require this residue for heterodimer formation or, alternatively, does not require the glycoprotein subunit for function.Paper_evidenceWBPaper00006408
Curator_confirmedWBPerson1843
Date_last_updated02 Mar 2006 00:00:00
Automated_descriptionPredicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to be located in membrane.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST13A10.10a
Corresponding_CDS_historyT13A10.10a:wp174
T13A10.10b:wp174
Corresponding_transcriptT13A10.10b
T13A10.10a.1
Other_sequenceOden_isotig01888
Oden_isotig01889
Oden_isotig01891
Dviv_isotig12652
Oden_isotig01890
JI176936.1
Dviv_isotig12653
CBC14700_1
Dviv_isotig12654
Associated_featureWBsf230147
Experimental_infoRNAi_result (12)
Expr_patternExpr1025936
Expr1156818
Expr2009067
Expr2027303
Microarray_results (20)
Expression_cluster (143)
InteractionWBInteraction000309425
WBInteraction000314773
WBInteraction000465674
WBInteraction000521016
Map_infoMapIVPosition3.11439Error0.00084
PositivePositive_cloneT13A10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00006408
WBPaper00024381
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene