WormBase Tree Display for Gene: WBGene00020047
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WBGene00020047 | SMap | S_parent | Sequence | R13A5 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | ttr | ||||||
Allele | WBVar01500260 | ||||||
WBVar00066464 | |||||||
WBVar01408884 | |||||||
WBVar00065718 | |||||||
WBVar00099691 | |||||||
WBVar01499774 | |||||||
WBVar00839744 | |||||||
WBVar00839745 | |||||||
WBVar00839746 | |||||||
WBVar00839747 | |||||||
WBVar00839748 | |||||||
WBVar00839749 | |||||||
WBVar00839750 | |||||||
WBVar01645478 | |||||||
WBVar01645479 | |||||||
WBVar00401763 | |||||||
WBVar01939210 | |||||||
WBVar00401764 | |||||||
WBVar00261659 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00089797 | ||||||
00124767 | |||||||
Ortholog (27) | |||||||
Paralog (62) | |||||||
Structured_description | Concise_description | R13A5.3 encodes a protein containing a predicted signal sequence followed by a transthyretin-like domain; although the product of R13A5.3 belongs to a family of apparently nematode-specific proteins whose function is not yet known, loss of R13A5.3 activity via RNAi has been reported to result in hyperactive locomotion. | Paper_evidence | WBPaper00002969 | |||
WBPaper00005487 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 04 Sep 2007 00:00:00 | ||||||
Automated_description | Predicted to be located in cell surface and extracellular region. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | R13A5.3 | |||||
Corresponding_transcript | R13A5.3.1 | ||||||
R13A5.3.2 | |||||||
Other_sequence | BF599158.1 | ||||||
Tcir_isotig26008 | |||||||
AI130656.1 | |||||||
AI057990.1 | |||||||
OVC00245_1 | |||||||
BE420528.1 | |||||||
CR00280 | |||||||
AI111321.1 | |||||||
CRC01238_1 | |||||||
BE209013.1 | |||||||
AI111311.1 | |||||||
AI130246.1 | |||||||
AI130520.1 | |||||||
AI239309.1 | |||||||
AI061479.1 | |||||||
AA917235.1 | |||||||
Tcol_isotig13600 | |||||||
Associated_feature | WBsf645347 | ||||||
WBsf225266 | |||||||
Experimental_info | RNAi_result | WBRNAi00062788 | Inferred_automatically | RNAi_primary | |||
WBRNAi00005677 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00034916 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00017818 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00051889 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1017122 | ||||||
Expr1155546 | |||||||
Expr2017598 | |||||||
Expr2035737 | |||||||
Drives_construct | WBCnstr00025404 | ||||||
Construct_product | WBCnstr00025404 | ||||||
Microarray_results (19) | |||||||
Expression_cluster (190) | |||||||
Interaction (118) | |||||||
Map_info | Map | III | Position | -0.666614 | Error | 0.000371 | |
Positive | Positive_clone | R13A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00002969 | ||||||
WBPaper00005487 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |