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WormBase Tree Display for Gene: WBGene00010117

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Name Class

WBGene00010117SMapS_parentSequenceF55F3
IdentityVersion2
NameCGC_namenkb-3Person_evidenceWBPerson919
WBPerson287
Sequence_nameF55F3.3
Molecular_nameF55F3.3a
F55F3.3a.1
CE18746
F55F3.3b
CE49141
F55F3.3b.1
Other_nameCELE_F55F3.3Accession_evidenceNDBBX284606
Public_namenkb-3
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:51WBPerson1971EventImportedInitial conversion from CDS class of WS125
221 Oct 2008 09:57:22WBPerson2970Name_changeCGC_namenkb-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnkb
AlleleWBVar01499887
WBVar01499519
WBVar01499888
WBVar00217101
WBVar00522693
WBVar01499710
WBVar00522694
WBVar01498974
WBVar00522695
WBVar00522696
WBVar00522697
WBVar00522698
WBVar00522699
WBVar00522700
WBVar00522701
WBVar00522702
WBVar00522703
WBVar00522704
WBVar00522705
WBVar00522706
WBVar01203770
WBVar01203771
WBVar01203772
WBVar02101679
WBVar01203773
WBVar01203774
WBVar01203775
WBVar01203776
WBVar01203777
WBVar01203778
WBVar01552438
WBVar01552439
WBVar01203779
WBVar01552440
WBVar01203780
WBVar01552441
WBVar01203781
WBVar01203782
WBVar01552442
WBVar01203783
WBVar01203784
WBVar01203785
WBVar01544668
WBVar01203786
WBVar01544669
WBVar01203787
WBVar01203788
WBVar01203789
WBVar01203790
WBVar01203791
WBVar01203792
WBVar01203793
WBVar01203794
WBVar01203795
WBVar01203796
WBVar01203797
WBVar01203798
WBVar01203799
WBVar01203800
WBVar01203801
WBVar01203802
WBVar01203803
WBVar02011654
WBVar01203804
WBVar01203805
WBVar01203806
WBVar01203807
WBVar01203808
WBVar01679216
WBVar01203809
WBVar01679217
WBVar01498866
WBVar01941777
WBVar01941778
WBVar02050681
WBVar00092960
WBVar00084334
WBVar00084335
WBVar00084336
WBVar00084337
WBVar00084338
WBVar00317167
WBVar01703837
WBVar01472189
WBVar01472190
WBVar01472191
WBVar01572671
WBVar01572672
WBVar01901770
WBVar02072060
WBVar01901771
WBVar01901772
WBVar01901773
WBVar01946194
WBVar01822638
WBVar01498960
WBVar01500067
StrainWBStrain00032190
RNASeq_FPKM (74)
GO_annotation (18)
OrthologWBGene00029440Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00065301Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00163106Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00089619Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00059252Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00164005Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00133216Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00224696Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g3672Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2731Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g3479Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g12750Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g18106Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g20435Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g11179Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g3718Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13281Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g26193Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g12711Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00490.g11460Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_X.g26220Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g22037Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00644.g13944Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01564Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_025767Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01565Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g6229Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0120500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g20473Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00240041Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00089618Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00257982Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00289527Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0015776Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
FB:FBgn0015777Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
FB:FBgn0032946Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-990415-167Danio rerioFrom_analysisHieranoid
OMA
OrthoFinder
OrthoInspector
Panther
ZFIN:ZDB-GENE-001127-3Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-001127-2Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-001127-1Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-001127-4Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-010718-1Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-070412-1Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:804Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:805Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:806Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:808Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:88108Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:88109Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:107788Mus musculusFrom_analysisHieranoid
OMA
OrthoFinder
OrthoInspector
Panther
MGI:88114Mus musculusFrom_analysisHieranoid
OrthoFinder
OrthoInspector
Panther
MGI:1915071Mus musculusFrom_analysisHieranoid
OMA
OrthoFinder
OrthoInspector
Panther
RGD:2171Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:2178Rattus norvegicusFrom_analysisHieranoid
OrthoFinder
OrthoInspector
Panther
RGD:2172Rattus norvegicusFrom_analysisHieranoid
OMA
OrthoFinder
OrthoInspector
Panther
RGD:2170Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:620994Rattus norvegicusFrom_analysisHieranoid
OMA
OrthoFinder
OrthoInspector
Panther
ParalogWBGene00007646Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00008074Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATPase activator activity. Predicted to be involved in intracellular monoatomic cation homeostasis and monoatomic cation transmembrane transport. Predicted to be located in plasma membrane. Predicted to be part of sodium:potassium-exchanging ATPase complex. Human ortholog(s) of this gene implicated in essential hypertension. Is an ortholog of several human genes including ATP1B1 (ATPase Na+/K+ transporting subunit beta 1); ATP1B2 (ATPase Na+/K+ transporting subunit beta 2); and ATP1B3 (ATPase Na+/K+ transporting subunit beta 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:10825Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:804)
Molecular_infoCorresponding_CDSF55F3.3a
F55F3.3b
Corresponding_transcriptF55F3.3a.1
F55F3.3b.1
Other_sequence (25)
Associated_feature (18)
Experimental_infoRNAi_resultWBRNAi00015741Inferred_automaticallyRNAi_primary
WBRNAi00048521Inferred_automaticallyRNAi_primary
WBRNAi00032885Inferred_automaticallyRNAi_primary
Expr_patternExpr1011973
Expr1034423
Expr1152308
Expr2014270
Expr2032510
Drives_constructWBCnstr00031655
Construct_productWBCnstr00031655
Microarray_results (20)
Expression_cluster (203)
Interaction (19)
Map_infoMapXPosition14.8511Error0.043921
PositivePositive_cloneF55F3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00033444
WBPaper00038491
WBPaper00043657
WBPaper00049828
WBPaper00055090
WBPaper00065026
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene