WormBase Tree Display for Gene: WBGene00019880
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WBGene00019880 | SMap | S_parent | Sequence | R05D3 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | R05D3.6 | |||||||
Molecular_name | R05D3.6 | ||||||||
R05D3.6.1 | |||||||||
CE00285 | |||||||||
Other_name | CELE_R05D3.6 | Accession_evidence | NDB | BX284603 | |||||
Public_name | R05D3.6 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele | WBVar01500260 | ||||||||
WBVar02122819 | |||||||||
WBVar02121003 | |||||||||
WBVar02123228 | |||||||||
WBVar01499023 | |||||||||
WBVar01499774 | |||||||||
WBVar02121595 | |||||||||
WBVar01498673 | |||||||||
WBVar02123998 | |||||||||
WBVar02120685 | |||||||||
WBVar01498685 | |||||||||
WBVar02124407 | |||||||||
WBVar02124959 | |||||||||
WBVar01498726 | |||||||||
WBVar00145309 | |||||||||
WBVar01498375 | |||||||||
WBVar02121874 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00042914 | ||||||||
00042915 | |||||||||
00042916 | |||||||||
00042917 | |||||||||
00042918 | |||||||||
00042919 | |||||||||
00042920 | |||||||||
00042921 | |||||||||
00042922 | |||||||||
00042923 | |||||||||
00042924 | |||||||||
00042925 | |||||||||
00042926 | |||||||||
00124637 | |||||||||
00124638 | |||||||||
00124639 | |||||||||
Contained_in_operon | CEOP3512 | ||||||||
Ortholog (16) | |||||||||
Paralog | WBGene00017982 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00022582 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | R05D3.6 encodes the epsilon subunit of the soluble, catalytic F1 portion of ATP synthase (mitochondrial respiratory chain [MRC] complex V); RNAi experiments indicate that loss of R05D3.6 activity has minor effects on growth rate. | Paper_evidence | WBPaper00024944 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Jan 2007 00:00:00 | ||||||||
Automated_description | Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in proton motive force-driven mitochondrial ATP synthesis. Located in mitochondrion. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency nuclear type 3. Is an ortholog of human ATP5F1E (ATP synthase F1 subunit epsilon) and ATP5F1EP2 (ATP synthase F1 subunit epsilon pseudogene 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0060332 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:838) | ||||
Molecular_info | Corresponding_CDS | R05D3.6 | |||||||
Corresponding_transcript | R05D3.6.1 | ||||||||
Other_sequence (18) | |||||||||
Associated_feature | WBsf993321 | ||||||||
WBsf227119 | |||||||||
WBsf227120 | |||||||||
WBsf227121 | |||||||||
Experimental_info | RNAi_result (17) | ||||||||
Expr_pattern | Expr1021199 | ||||||||
Expr1154982 | |||||||||
Drives_construct | WBCnstr00025526 | ||||||||
Construct_product | WBCnstr00025526 | ||||||||
Microarray_results | SMD_R05D3.6 | ||||||||
190806_s_at | |||||||||
Expression_cluster (71) | |||||||||
Interaction | WBInteraction000151270 | ||||||||
WBInteraction000536370 | |||||||||
WBInteraction000536383 | |||||||||
WBInteraction000536397 | |||||||||
WBInteraction000539719 | |||||||||
WBInteraction000548168 | |||||||||
WBInteraction000551840 | |||||||||
Map_info | Positive | Positive_clone | R05D3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | III | -0.32556 | |||||||
Reference | WBPaper00024944 | ||||||||
Method | Gene |