WormBase Tree Display for Gene: WBGene00021900

WBGene00021900 SMap: S_parent: Sequence: CHROMOSOME_III
  Identity: Version: 1
    Name: Sequence_name: Y54H5A.2
      Molecular_name: Y54H5A.2
        Y54H5A.2.1
        CE32024
      Other_name: CELE_Y54H5A.2 Accession_evidence: NDB BX284603
      Public_name: Y54H5A.2
    DB_info: Database: AceView gene 3G228
        WormQTL gene WBGene00021900
        WormFlux gene WBGene00021900
        NDB locus_tag CELE_Y54H5A.2
        Panther gene CAEEL|WormBase=WBGene00021900|UniProtKB=Q9BL64
          family PTHR13387
        NCBI gene 175699
        RefSeq protein NM_065688.7
        TREEFAM TREEFAM_ID TF313296
        TrEMBL UniProtAcc Q9BL64
        UniProt_GCRP UniProtAcc Q9BL64
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01445610
      WBVar00297237
      WBVar01995161
      WBVar01995162
      WBVar01995163
      WBVar01995164
      WBVar01644539
      WBVar01644540
      WBVar01644541
      WBVar01644542
      WBVar01644543
      WBVar01644544
      WBVar00259853
      WBVar01644545
      WBVar01644546
      WBVar01644547
      WBVar01644548
      WBVar01644549
      WBVar01644550
      WBVar01644551
      WBVar02015227
      WBVar02076599
      WBVar00253624
      WBVar01837555
      WBVar02010478
      WBVar02010480
      WBVar01710031
      WBVar01893335
      WBVar01893336
      WBVar01893337
      WBVar02078522
      WBVar00264886
      WBVar00825899
      WBVar00825900
      WBVar00825901
      WBVar00825902
      WBVar01497398
      WBVar00825903
      WBVar00825904
      WBVar00825905
      WBVar00825906
      WBVar00825907
      WBVar00825908
      WBVar00825909
      WBVar00825910
      WBVar01667452
      WBVar00825911
      WBVar00825912
      WBVar00825913
      WBVar00825914
      WBVar00825915
      WBVar00825916
      WBVar00825917
      WBVar01628501
      WBVar00825918
      WBVar01263445
      WBVar01263446
      WBVar00825919
      WBVar01263447
      WBVar00825920
      WBVar00825921
      WBVar01263448
      WBVar00825922
      WBVar01541731
      WBVar00825923
      WBVar00825924
      WBVar00825925
      WBVar01785700
      WBVar00825926
      WBVar01785701
      WBVar00825927
      WBVar00825928
      WBVar01785702
      WBVar00825929
      WBVar00825930
      WBVar00825931
      WBVar00825932
      WBVar00256458
      WBVar00825933
      WBVar00825934
      WBVar01408577
      WBVar01408579
      WBVar00825935
      WBVar00825936
      WBVar00825937
      WBVar00825938
      WBVar00825939
      WBVar00825940
      WBVar00825941
      WBVar00825942
      WBVar01722457
      WBVar00825943
      WBVar01396794
      WBVar02131984
      WBVar00825944
      WBVar00825945
      WBVar00825946
      WBVar00825947
      WBVar00825948
      WBVar00825949
      WBVar00056076
      WBVar00825950
      WBVar00825951
      WBVar00056081
      WBVar00825952
      WBVar00825953
      WBVar00825954
      WBVar00056086
      WBVar00397340
      WBVar00825955
      WBVar00397341
      WBVar00056091
      WBVar00825956
      WBVar00397342
      WBVar00825957
      WBVar00825958
      WBVar00397343
      WBVar00056096
      WBVar00397344
      WBVar00397345
      WBVar02154248
      WBVar00397346
      WBVar00397347
      WBVar00397348
      WBVar00397349
      WBVar01852298
      WBVar00397350
      WBVar00397351
      WBVar00397352
      WBVar00397353
      WBVar00397354
      WBVar00397355
      WBVar00397356
      WBVar00397357
      WBVar00397358
      WBVar00397359
      WBVar00397360
      WBVar00397361
      WBVar00397362
      WBVar00397363
      WBVar00397364
      WBVar00397365
      WBVar00397366
      WBVar00397367
      WBVar00397368
      WBVar00397369
      WBVar01990081
      WBVar00397370
      WBVar01990082
      WBVar01445606
      WBVar01445609
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP3259
    Ortholog (35)
    Structured_description: Automated_description: Enriched in several structures, including ABarppaapp; GLR; germ line; lateral ganglion; and pharyngeal cell based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; gld-1; and sir-2.1 based on microarray; RNA-seq; and proteomic studies. Is affected by thirteen chemicals including bisphenol S; stavudine; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein HGH1 N-terminal; Armadillo-type fold; Protein Hgh1; Domain of unknown function (DUF384); Armadillo-like helical; Protein HGH1 C-terminal; Domain of unknown function (DUF383); and Phosphorylation site. Is an ortholog of human HGH1 (HGH1 homolog). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y54H5A.2
    Corresponding_CDS_history: Y54H5A.2:wp86
    Corresponding_transcript: Y54H5A.2.1
    Other_sequence (24)
    Associated_feature (36)
  Experimental_info: RNAi_result: WBRNAi00037504 Inferred_automatically: RNAi_primary
      WBRNAi00008676 Inferred_automatically: RNAi_primary
      WBRNAi00057489 Inferred_automatically: RNAi_primary
      WBRNAi00007073 Inferred_automatically: RNAi_primary
      WBRNAi00057488 Inferred_automatically: RNAi_primary
      WBRNAi00095803 Inferred_automatically: RNAi_primary
      WBRNAi00070199 Inferred_automatically: RNAi_primary
      WBRNAi00057486 Inferred_automatically: RNAi_primary
      WBRNAi00085872 Inferred_automatically: RNAi_primary
      WBRNAi00057487 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025778
      Expr1039617
      Expr1160928
      Expr2007964
      Expr2026206
    Drives_construct: WBCnstr00024409
    Construct_product: WBCnstr00024409
    Microarray_results (21)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049954:BPS_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_nucleus_expressed
      WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056826:SGP_biased
      WBPaper00057136:yap-1(ys38)_upregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00061274:hypergravity_15xg_downregulated
      WBPaper00061340:AVA
      WBPaper00061340:AVH
      WBPaper00061340:GLR
      WBPaper00061340:Neuroblast_ALM_BDU
      WBPaper00061340:pm1_pm2
      WBPaper00061340:pm3_pm4_pm5
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061527:B0511.6_180-Y54E10BR.4_1509
      WBPaper00061527:F45H10.2-R53.4_21676
      WBPaper00061651:I6_enriched
      WBPaper00062325:etr-1(lq61)_downregulated
      WBPaper00062554:MAGU-2_interacting
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064163:ZNFX-1_interacting_embryo
      WBPaper00064201:SNA-3_interacting
      WBPaper00064716:paraquat_upregulated
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065841:28_0
      WBPaper00065841:129_0
      WBPaper00065841:135_0
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00032948:StarveUp4
      WBPaper00036123:Atrazine_regulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036286:Pattern_H
      WBPaper00037113:Diazinon_16C_regulated
      WBPaper00037901:GLD-1_mRNA_targets
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00040963:Q200_up
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_24h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00042274:tbx-2(bx59)_upregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(83_min)
      [cgc5767]:expression_class_E_pi(23_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_MET
      [cgc6390]:oogenesis-enriched
    Interaction: WBInteraction000041552
      WBInteraction000042301
      WBInteraction000045188
      WBInteraction000325345
      WBInteraction000548744
      WBInteraction000574986
      WBInteraction000579679
      WBInteraction000583540
      WBInteraction000585021
      WBInteraction000586789
    WBProcess: WBbiopr:00000065
  Map_info: Positive: Positive_clone: Y54H5A Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III -2.0716
  Reference: WBPaper00033040
    WBPaper00038491
    WBPaper00055090
  Method: Gene