WormBase Tree Display for Gene: WBGene00020164

WBGene00020164 SMap: S_parent: Sequence: T02G5
  Identity: Version: 2
    Name: Sequence_name: T02G5.4
      Molecular_name: T02G5.4
      Other_name: CELE_T02G5.4 Accession_evidence: NDB BX284602
      Public_name: T02G5.4
    DB_info: Database: AceView gene 2H373
        WormQTL gene WBGene00020164
        WormFlux gene WBGene00020164
        NDB locus_tag CELE_T02G5.4
        NCBI gene 187992
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 28 May 2013 16:18:41 WBPerson615 Event: Changed_class: CDS Pseudogene
    Status: Live
  Gene_info: Biotype: SO:0000336
    Allele: WBVar01499702
      WBVar01307425
      WBVar01307426
      WBVar01496954
      WBVar01934886
      WBVar01498435
      WBVar01655353
      WBVar00296625
      WBVar00369471
      WBVar00369472
      WBVar00369473
      WBVar00369474
      WBVar00369475
      WBVar00369476
      WBVar00601343
      WBVar01241044
      WBVar01241045
      WBVar01241046
      WBVar01498701
      WBVar01626676
      WBVar00551178
      WBVar02033395
      WBVar00741979
      WBVar00741980
      WBVar00741981
      WBVar00741982
      WBVar00741983
      WBVar00741984
      WBVar00741985
      WBVar00741986
      WBVar00741987
      WBVar00741988
      WBVar00741989
      WBVar00741990
      WBVar00741991
    Strain: WBStrain00037346
    RNASeq_FPKM (74)
    Ortholog: WBGene00148932 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00215382 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00129039 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00054254 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00099611 Pristionchus pacificus From_analysis: Inparanoid_8
    Paralog: WBGene00002183 Caenorhabditis elegans From_analysis: Inparanoid_8
    Structured_description: Automated_description: Enriched in germ line; intestine; and muscle cell based on RNA-seq and microarray studies. Is affected by several genes including daf-16; eat-2; and sir-2.1 based on microarray and RNA-seq studies. Is affected by seventeen chemicals including manganese chloride; D-glucose; and bisphenol S based on RNA-seq; proteomic; and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: T02G5.4:wp227
      T02G5.4:wp230
    Corresponding_pseudogene: T02G5.4
    Other_sequence: JI168261.1
      HG02281
      ES742581.1
      CBC01982_1
      CRC04894_1
    Associated_feature: WBsf657201
      WBsf657793
      WBsf657794
      WBsf657795
      WBsf657796
      WBsf657797
  Experimental_info: Expr_pattern: Expr1010961
      Expr1038768
      Expr1155860
    Microarray_results (13)
    Expression_cluster: WBPaper00033065:clk-1(qm30)_upregulated
      WBPaper00033065:isp-1-1(qm150)_upregulated
      WBPaper00035073:mitochondria_protein
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00044037:eat-2_downregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Spermatogenic
      WBPaper00045774:clk-1_upregulated
      WBPaper00046121:mesoderm_unique
      WBPaper00046509:lin-35(n745)_downregulated
      WBPaper00046805:csr-1(RNAi)_downregulated_Set1
      WBPaper00048611:MnCl2_downregulated
      WBPaper00048923:Aging_regulated
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00048988:neuron_expressed
      WBPaper00049098:hrde-1(tm1200)-induced_15C
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
      WBPaper00049954:BPS_downregulated
      WBPaper00050080:rbr-2(tm3141)_downregulated
      WBPaper00050234:lin-28(RNAi)_upregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_25C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050599:nicotine(0.01mM)_upregulated
      WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:downregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00051039:germline_enriched
      WBPaper00051265:F1_hrde-1(tm1200)_upregulated
      WBPaper00051265:F1_morc-1(tm6048)_upregulated
      WBPaper00051265:F4_hrde-1(tm1200)_upregulated
      WBPaper00051265:F4_morc-1(tm6048)_upregulated
      WBPaper00051404:alg-2(ok304)_upregulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053295:lin-22(icb38)_upregulated
      WBPaper00053295:lin-22(ot267)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_fed-L1_Truseq
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00053814:25C_upregulated_OP50
      WBPaper00053814:25C_upregulated_PY79
      WBPaper00054571:BPA_F3_germline_upregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056165:mina-1(ok1521)_upregulated_transcript
      WBPaper00056471:flcn-1(ok975)_downregulated
      WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_upregulated
      WBPaper00057140:pptr-1(tm3103)_upregulated
      WBPaper00057161:meg-3(tm4259)_meg-4(ax2026)_upregulated_endo-siRNA_targets
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00058725:sftb-1(cer39)_downregulated
      WBPaper00059605:mut-16(pk710)_upregulated
      WBPaper00059739:hira-1(gk835598)_upregulated_adult
      WBPaper00059739:hira-1(gk835598)_upregulated_L4
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060224:atf-6(ok551)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061274:hypergravity_15xg_upregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061527:C16A11.5-C16C8.13
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062440:crh-1(n3315)_upregulated
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064107:lin-52(3A)_vs_lin-52(WT)_downregulated
      WBPaper00065835:Day11_vs_Day1_downregulated
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_3
      WBPaper00005124:estrogen_10-5M_regulated
      WBPaper00025032:cluster_8
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00029437:dcr-1_downregulated
      WBPaper00031003:0hr_muscle_enriched
      WBPaper00031003:24hr_muscle_enriched
      WBPaper00031003:hlh_1_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00031060:2-deoxy-D-glucose_downregulated
      WBPaper00036383:ash-2_Day8_regulated
      WBPaper00041002:HF_11d_2.0mM_Up
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00045263:ProLongevity-mtROS_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_allantoin_upregulated
      WBPaper00057098:SiO2-nanoparticles_downregulated
    Interaction (94)
  Map_info: Positive: Positive_clone: T02G5 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II 0.493298
  Reference: WBPaper00026800
    WBPaper00029292
    WBPaper00038491
    WBPaper00042257
  Method: Gene