WormBase Tree Display for Gene: WBGene00019824

WBGene00019824 SMap: S_parent: Sequence: R02D3
  Identity: Version: 2
    Name: CGC_name: rcat-1 Paper_evidence: WBPaper00062517
      Sequence_name: R02D3.7
      Molecular_name: R02D3.7
        R02D3.7.1
        CE18101
      Other_name: CELE_R02D3.7 Accession_evidence: NDB BX284604
      Public_name: rcat-1
    DB_info: Database: AceView gene 4B8
        WormQTL gene WBGene00019824
        WormFlux gene WBGene00019824
        NDB locus_tag CELE_R02D3.7
        Panther gene CAEEL|WormBase=WBGene00019824|UniProtKB=O44505
          family PTHR33936
        NCBI gene 176844
        RefSeq protein NM_067485.6
        TREEFAM TREEFAM_ID TF343889
        TrEMBL UniProtAcc O44505
        UniProt_GCRP UniProtAcc O44505
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 26 Jan 2024 23:28:21 WBPerson51134 Name_change: CGC_name: rcat-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rcat
    Allele: WBVar00414878
      WBVar01499166
      WBVar00414879
      WBVar01607426
      WBVar00414880
      WBVar00414881
      WBVar00414882
      WBVar00414883
      WBVar01984259
      WBVar01499608
      WBVar00092947
      WBVar00598701
      WBVar00879149
      WBVar00879150
      WBVar00879151
      WBVar00879152
      WBVar00879153
      WBVar00879154
      WBVar00879155
      WBVar00879156
      WBVar00879157
      WBVar00879158
      WBVar00879159
      WBVar00879160
      WBVar00879161
      WBVar00879162
      WBVar00879163
      WBVar00879164
      WBVar00879165
      WBVar00879166
      WBVar00879167
      WBVar00879168
      WBVar02133147
    Strain: WBStrain00032185
    RNASeq_FPKM (74)
    Ortholog (23)
    Paralog (11)
    Structured_description: Automated_description: Expressed in body wall musculature; excretory cell; head muscle; seam cell; and ventral nerve cord. Is predicted to encode a protein with the following domain: Zinc finger C2H2-type. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R02D3.7
    Corresponding_transcript: R02D3.7.1
    Other_sequence: CR05767
      CRC01752_1
      CBC02628_1
    Associated_feature: WBsf651609
      WBsf978693
      WBsf981658
      WBsf995112
      WBsf995113
      WBsf1016527
      WBsf229657
      WBsf229658
      WBsf229659
    Gene_product_binds (3958)
    Transcription_factor: WBTranscriptionFactor000755
  Experimental_info: RNAi_result: WBRNAi00034531 Inferred_automatically: RNAi_primary
      WBRNAi00051128 Inferred_automatically: RNAi_primary
      WBRNAi00017316 Inferred_automatically: RNAi_primary
      WBRNAi00062323 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr7626
      Expr1010529
      Expr1038591
      Expr1154837
      Expr1200069
      Expr2005316
      Expr2023536
    Drives_construct: WBCnstr00012771
      WBCnstr00025570
    Construct_product: WBCnstr00016552
      WBCnstr00016713
      WBCnstr00025570
    Microarray_results (18)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
      WBPaper00045417:128Q-huntingtin_upreglated
      WBPaper00045420:fertilization_upregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00046338:intestine_unique
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048611:MnCl2_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_3
      WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
      WBPaper00049920:Glucose-Diet_downregulated_N2
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051265:F4_morc-1(tm6048)_upregulated
      WBPaper00052868:ALA_upregulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00054913:AKIR-1_interacting_protein
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin_upregulated
      WBPaper00055482:pmt-2(RNAi)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056284:ints-5(RNAi)_downregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060459:bcat-1(RNAi)_downregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061203:let-418(n3536)_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061340:Neuroblast_ALA_RMED
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061466:nath-10(icb99)_upregulated
      WBPaper00061466:nath-10(icb102)_upregulated
      WBPaper00061527:pch-2-B0393.3
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_downregulated
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_2
      WBPaper00025032:cluster_4
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_B
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040963:TA300_down
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00042128:gei-8(ok1671)_downregulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_1
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(143_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:Cluster_E
      [cgc6390]:oogenesis-enriched
    Interaction (30)
  Map_info: Map: IV Position: -26.7756
    Positive: Positive_clone: R02D3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00062517
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene