WormBase Tree Display for Gene: WBGene00019649

WBGene00019649 SMap: S_parent: Sequence: K11D12
  Identity: Version: 2
    Name: CGC_name: exc-14 Person_evidence: WBPerson81
      Sequence_name: K11D12.9
      Molecular_name: K11D12.9
        K11D12.9.1
        CE29517
      Other_name: CELE_K11D12.9 Accession_evidence: NDB BX284605
      Public_name: exc-14
    DB_info: Database: AceView gene 5F522
        WormQTL gene WBGene00019649
        WormFlux gene WBGene00019649
        NDB locus_tag CELE_K11D12.9
        Panther gene CAEEL|WormBase=WBGene00019649|UniProtKB=O44624
          family PTHR12183
        NCBI gene 178892
        RefSeq protein NM_071953.5
        TREEFAM TREEFAM_ID TF351144
        TrEMBL UniProtAcc O44624
        UniProt_GCRP UniProtAcc O44624
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 20 May 2019 14:10:26 WBPerson1983 Name_change: CGC_name: exc-14
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: exc
    Allele: WBVar02060055
      WBVar02060056
      WBVar01499528
      WBVar00457575
      WBVar00457576
      WBVar00457577
      WBVar00457578
      WBVar01997808
      WBVar00457579
      WBVar00457580
      WBVar00457581
      WBVar00457582
      WBVar00457583
      WBVar00457584
      WBVar01499740
      WBVar01500129
      WBVar00585559
      WBVar01973238
      WBVar00585561
      WBVar01973239
      WBVar01973240
      WBVar01973241
      WBVar01973242
      WBVar02115336
      WBVar01807811
      WBVar02023647
      WBVar01842082
      WBVar01842083
      WBVar01842084
      WBVar00208666
      WBVar00208667
      WBVar00208668
      WBVar00208669
      WBVar00208670
      WBVar00208671
      WBVar00208672
      WBVar00208673
      WBVar01588117
      WBVar01588118
      WBVar01484003
      WBVar01009542
      WBVar02054644
      WBVar02054645
      WBVar01009543
      WBVar01009544
      WBVar02054646
      WBVar01009545
      WBVar02054647
      WBVar01009546
      WBVar01009547
      WBVar01009548
      WBVar01009549
      WBVar01009550
      WBVar01009551
      WBVar01009552
      WBVar01009553
      WBVar01009554
      WBVar01009555
      WBVar01009556
      WBVar01009557
      WBVar01862070
      WBVar01009558
      WBVar01009559
      WBVar01862071
      WBVar01862072
      WBVar01499496
      WBVar01862073
      WBVar01499316
      WBVar01500066
    RNASeq_FPKM (74)
    GO_annotation: 00032982
      00032983
      00032984
    Ortholog (20)
    Structured_description: Automated_description: Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination. Is an ortholog of human MUL1 (mitochondrial E3 ubiquitin protein ligase 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K11D12.9
    Corresponding_transcript: K11D12.9.1
    Other_sequence: AS06104
      CGC00418_1
      AS05518
      CGC00110_1
      CJC11041_1
      AS05674
      CBC14302_1
      AS08324
    Associated_feature (4)
  Experimental_info: RNAi_result: WBRNAi00088876 Inferred_automatically: RNAi_primary
      WBRNAi00070346 Inferred_automatically: RNAi_primary
      WBRNAi00088862 Inferred_automatically: RNAi_primary
      WBRNAi00070347 Inferred_automatically: RNAi_primary
      WBRNAi00088941 Inferred_automatically: RNAi_primary
      WBRNAi00070345 Inferred_automatically: RNAi_primary
      WBRNAi00088903 Inferred_automatically: RNAi_primary
      WBRNAi00034282 Inferred_automatically: RNAi_primary
      WBRNAi00050594 Inferred_automatically: RNAi_primary
      WBRNAi00094769 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021103
      Expr1154301
      Expr2005061
      Expr2023281
    Drives_construct: WBCnstr00025702
    Construct_product: WBCnstr00025702
    Microarray_results (18)
    Expression_cluster: WBPaper00031040:Cluster_3
      WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00032425:down_in_zfp-1
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00037950:excretory-cell_larva_enriched
      WBPaper00037950:excretory-cell_larva_SelectivelyEnriched
      WBPaper00037950:GABAergic-motor-neurons_larva_SelectivelyEnriched
      WBPaper00037950:intestine_larva_enriched
      WBPaper00037950:pharyngeal-muscle_embryo_enriched
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045420:fertilization_upregulated_transcript
      WBPaper00045774:clk-1_upregulated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050743:elli-1(sam-3)_downregulated
      WBPaper00050990:hypodermis_enriched
      WBPaper00050990:hypodermis_expressed
      WBPaper00051558:aging_regulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:mes-4(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053771:down_by_skn-1(RNAi)_at_24h-NaCl
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00053810:sod-2(ok1030)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin_downregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056826:hmc_biased
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00058969:RIS_depleted
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00061340:Excretory_cell
      WBPaper00061340:hyp1V_and_ant_arc_V
      WBPaper00061340:Rectal_gland
      WBPaper00061340:XXX
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061466:nath-10(icb102)_downregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:nhr-18-C34D1.4_6256
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00065086:JU1400_N.ausubeli_regulated
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065086:JU1400_N.ironsii_regulated
      WBPaper00065086:JU1400_N.parisii_regulated
      WBPaper00065086:N2_N.ausubeli_regulated
      WBPaper00065086:N2_N.ferruginous_regulated
      WBPaper00065086:N2_N.ironsii_regulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065841:3_4
      WBPaper00065841:30_0
      WBPaper00065841:30_4
      WBPaper00065841:79_1
      WBPaper00065841:79_2
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4386_cluster_3_5
      cgc4489_group_9
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00030985:Erwinia_carotovora_upregulated
      WBPaper00031003:hlh_1_enriched
      WBPaper00031832:slr-2_regulated
      WBPaper00032165:differentially_expressed_with_age_medoid_2
      WBPaper00032948:StarveUp2
      WBPaper00035227:heat_shock_regulated
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040876:mir-35_downregulated
      WBPaper00041174:environmental
      WBPaper00041174:environmental_prime
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00045960:L1-L4-lethargus_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00056330:mrps-5(RNAi)_upregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
    Interaction (32)
  Map_info: Positive: Positive_clone: K11D12 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V -3.57327
  Reference: WBPaper00027315
    WBPaper00038491
    WBPaper00055090
  Method: Gene