WormBase Tree Display for Gene: WBGene00018538

WBGene00018538 SMap: S_parent: Sequence: F47B7
  Identity: Version: 2
    Name: CGC_name: marg-1 Paper_evidence: WBPaper00046090
      Sequence_name: F47B7.7
      Molecular_name: F47B7.7a
        F47B7.7a.1
        CE35544
        F47B7.7b
        CE43827
        F47B7.7b.1
      Other_name: CELE_F47B7.7 Accession_evidence: NDB BX284606
      Public_name: marg-1
    DB_info: Database: AceView gene XE398
        WormQTL gene WBGene00018538
        WormFlux gene WBGene00018538
        NDB locus_tag CELE_F47B7.7
        NCBI gene 180665
        RefSeq protein NM_001270076.5
            NM_001270075.4
        TREEFAM TREEFAM_ID TF317537
        TrEMBL UniProtAcc H2KZY6
            C6KRG1
        UniProt_GCRP UniProtAcc H2KZY6
    Species: Caenorhabditis elegans
    History: Version_change (2)
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: marg
    Allele: WBVar00499868
      WBVar00499869
      WBVar00499870
      WBVar00499871
      WBVar00499872
      WBVar00499873
      WBVar02139072
      WBVar02139073
      WBVar01819557
      WBVar01825096
      WBVar01136160
      WBVar01136161
      WBVar01136162
      WBVar01136163
      WBVar01136164
      WBVar01136165
      WBVar01136166
      WBVar01822531
      WBVar01136167
      WBVar01136168
      WBVar01136169
      WBVar01136170
      WBVar01136171
      WBVar01136172
      WBVar01136173
      WBVar01136174
      WBVar01136175
      WBVar01136176
      WBVar01136177
      WBVar01136178
      WBVar01136179
      WBVar01136180
      WBVar01136181
      WBVar01136182
      WBVar01136183
      WBVar01136184
      WBVar02145317
      WBVar01499636
      WBVar01497807
      WBVar00077270
      WBVar00077271
      WBVar00499866
      WBVar01500067
      WBVar00499867
    RNASeq_FPKM (74)
    Ortholog (27)
    Structured_description: Concise_description: F47B7.7 encodes a novel protein conserved amongst nematode species. Paper_evidence: WBPaper00032965
          Curator_confirmed: WBPerson1843
          Date_last_updated: 30 Apr 2009 00:00:00
      Automated_description: Expressed in marginal cell. Is predicted to encode a protein with the following domain: Phosphorylation site. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F47B7.7a
      F47B7.7b
    Corresponding_CDS_history: F47B7.7:wp108
    Corresponding_transcript: F47B7.7a.1
      F47B7.7b.1
    Other_sequence (18)
    Associated_feature: WBsf1004713
      WBsf1004714
      WBsf1004715
      WBsf1004716
      WBsf237213
      WBsf237214
      WBsf237215
      WBsf237216
  Experimental_info: RNAi_result: WBRNAi00015157 Inferred_automatically: RNAi_primary
      WBRNAi00032416 Inferred_automatically: RNAi_primary
      WBRNAi00047615 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr12510
      Expr12511
      Expr1027453
      Expr1037986
      Expr1151452
      Expr2013388
      Expr2031620
    Drives_construct: WBCnstr00021420
      WBCnstr00026435
    Construct_product: WBCnstr00026435
    Microarray_results (20)
    Expression_cluster: WBPaper00028451:Oogenic_protein
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00042561:smgl-1(RNAi)_upregulated
      WBPaper00042561:smgl-2(RNAi)_upregulated
      WBPaper00043945:MeHg_downregulated
      WBPaper00044037:eat-2_regulated_nhr-62_dependent
      WBPaper00044037:eat-2_upregulated
      WBPaper00044260:1-methylnicotinamide_upregulated
      WBPaper00044260:nicotinc-acid_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044656:tatn-1(qd182)_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044743:wdr-23_neuron_upregulated
      WBPaper00044760:germline_specific
      WBPaper00045017:blmp-1(tm548)_upregulated
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00045774:clk-1_upregulated
      WBPaper00045934:wrn-1(gk99)_upregulated
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00048988:neuron_expressed
      WBPaper00049290:rsks-1(sv31)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00049942:HeatShock_upregulated_hsf-1(+)
      WBPaper00050080:rbr-2(tm3141)_downregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050743:elli-1(sam-3)_downregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:body-muscle_enriched
      WBPaper00050990:body-muscle_expressed
      WBPaper00051404:alg-1(gk214)_upregulated
      WBPaper00051404:alg-2(ok304)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_downregulated_mRNA
      WBPaper00053388:dauer_regulated_Cluster1
      WBPaper00053402:cco-1(RNAi)_upregulated
      WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
      WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)
      WBPaper00054410:set-9(rw5)_upregulated
      WBPaper00054410:set-26(tm2467)_upregulated
      WBPaper00055013:hmg-4(RNAi)_upregulated
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055049:S.gordonii_downregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055648:anterior-head_expressed
      WBPaper00055648:pharynx_expressed
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055971:nhl-2(ok818)_20C_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056169:rrf-3(pk1426)_upregulated_L3
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057068:numr-1(RNAi)_downregulated_Cadmium
      WBPaper00057154:HeatShock_downregulated_mRNA
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058725:sftb-1(cer6)_downregulated
      WBPaper00058948:npr-8(ok1439)_downregulated_OP50
      WBPaper00058948:PA14_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059421:daf-1(m40)_upregulated
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059537:ngn-1(ok2200)_upregulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00059739:hira-1(gk835598)_upregulated_L1
      WBPaper00059816:crh-1(n3315)_uprgulated
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061340:ant_arc_V
      WBPaper00061340:Posterior_arcade_cell
      WBPaper00061340:Z1_Z4
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061377:MYRF-2_interacting
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061527:F40F8.4-C33G8.4
      WBPaper00061818:ELKS-1_interacting
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062118:neural-HSF-1_upregulated
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_downregulated_N2
      WBPaper00062347:blmp-1(tm548)_upregulated
      WBPaper00062446:nhr-8(hd117)_downregulated
      WBPaper00062456:doxycycline_downregulated_N2_protein
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064156:lbp-3(overexpress)_upregulated
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064539:nhr-114(gk849)_upregulated
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00065032:PAO1_vs_Delt.Pf4-infection_downregulated
      WBPaper00065074:glna(-)_upregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_20C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
      WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065623:57
      WBPaper00065823:pmk-1(km25)_upregulated
      WBPaper00065835:Day5_vs_Day1_downregulated
      WBPaper00065835:Day11_vs_Day1_downregulated
      WBPaper00065841:9_0
      WBPaper00065841:9_1
      WBPaper00065841:9_2
      WBPaper00065841:26_1
      WBPaper00065841:36_3
      WBPaper00065841:75_0
      WBPaper00065841:141_0
      WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
      WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_10
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00030985:Photorhabdus_luminescens_downregulated
      WBPaper00031532:Larva_Pan_Neuronal_Depleted
      WBPaper00034661:AgNPs_downregulated
      WBPaper00036286:Pattern_G
      WBPaper00038172:crh-1null_up_regulated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00040821:Au-NP_regulated
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_24h
      WBPaper00046083:oga-1(ok1207)_OP50_upregulated
      WBPaper00046548:dafachronic-acid_downregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00048989:N2_allantoin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc6390]:Cluster_B
    Interaction (17)
  Map_info: Positive: Positive_clone: F47B7 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X -9.42344
  Reference: WBPaper00032965
    WBPaper00062775
    WBPaper00065331
  Method: Gene