WormBase Tree Display for Gene: WBGene00016116

WBGene00016116 SMap: S_parent: Sequence: C25H3
  Identity: Version: 1
    Name: Sequence_name: C25H3.7
      Molecular_name: C25H3.7a
        C25H3.7a.1
        CE02505
        C25H3.7b
      Other_name: CELE_C25H3.7 Accession_evidence: NDB BX284602
      Public_name: C25H3.7
    DB_info: Database: AceView gene 2F956
        WormQTL gene WBGene00016116
        WormFlux gene WBGene00016116
        NDB locus_tag CELE_C25H3.7
        Panther gene CAEEL|WormBase=WBGene00016116|UniProtKB=Q8MQC1
          family PTHR12289
        NCBI gene 173961
        RefSeq protein NM_001267173.2
            NR_155253.1
        TrEMBL UniProtAcc Q8MQC1
        UniProt_GCRP UniProtAcc Q8MQC1
        RNAcentral URSid URS0000D56C5E
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01499702
      WBVar01498435
      WBVar00733372
      WBVar00733373
      WBVar00733374
      WBVar00733375
      WBVar00733376
      WBVar00733377
      WBVar00733378
      WBVar00733379
      WBVar00733380
      WBVar00733381
      WBVar00733382
      WBVar00733383
      WBVar00733384
      WBVar00733385
      WBVar00733386
      WBVar00733387
      WBVar01500128
      WBVar01538196
      WBVar00602288
      WBVar01695522
      WBVar00366635
      WBVar00366636
      WBVar00366637
      WBVar00366638
      WBVar00366639
      WBVar00366640
      WBVar00259641
      WBVar02154277
      WBVar01719907
      WBVar01719908
    RNASeq_FPKM (74)
    GO_annotation: 00084530
    Contained_in_operon: CEOP2728
    Ortholog (32)
    Paralog (12)
    Structured_description: Automated_description: Predicted to be located in cytoplasm. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C25H3.7a
    Corresponding_CDS_history: C25H3.7a:wp214
    Corresponding_transcript: C25H3.7b
      C25H3.7a.1
    Other_sequence (23)
    Associated_feature: WBsf665544
      WBsf665545
      WBsf665546
      WBsf665547
      WBsf987926
      WBsf1012249
      WBsf223081
      WBsf223082
      WBsf223083
  Experimental_info: RNAi_result: WBRNAi00115492 Inferred_automatically: RNAi_primary
      WBRNAi00072947 Inferred_automatically: RNAi_primary
      WBRNAi00041231 Inferred_automatically: RNAi_primary
      WBRNAi00115554 Inferred_automatically: RNAi_primary
      WBRNAi00072946 Inferred_automatically: RNAi_primary
      WBRNAi00011193 Inferred_automatically: RNAi_primary
      WBRNAi00029209 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025357
      Expr1036885
      Expr1145271
      Expr2001116
      Expr2019337
    Drives_construct: WBCnstr00028314
    Construct_product: WBCnstr00028314
    Microarray_results (24)
    Expression_cluster: WBPaper00028451:Low_abundance_spermatogenesis_enriched
      WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032528:L3_enriched
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00038289:oocyte_protein
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_upregulated
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00046012:tdp-1(ok803)_upregulated
      WBPaper00048926:miaserin_upregulated_adult-day5
      WBPaper00048988:neuron_expressed
      WBPaper00049290:rsks-1(sv31)_downregulated
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051404:alg-1(gk214)_upregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053810:clk-1(qm30)_upregulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_downregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_protein
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061466:nath-10(icb99)_upregulated
      WBPaper00061527:F45H10.2-R53.4_21676
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062554:MAGU-2_interacting
      WBPaper00062590:Aging_downregulated_hypodermis
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064130:Beta-Amyloid_downregulated_protein
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00025032:cluster_3
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00027342:alpha-Synuclein(WT)_upregulated
      WBPaper00031003:24hr_muscle_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00032948:StarveUp3
      WBPaper00035905:FBF-1_Associated
      WBPaper00037147:heatshock_upregulated
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00047070:xpa-1_UV_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_3
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
    Interaction (48)
  Map_info: Positive: Positive_clone: C25H3 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II -0.974271
  Reference: WBPaper00038491
    WBPaper00041771
    WBPaper00055090
  Method: Gene