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WormBase Tree Display for Gene: WBGene00013567

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Name Class

WBGene00013567SMapS_parentSequenceY75B12B
IdentityVersion1
NameSequence_nameY75B12B.1
Molecular_name (11)
Other_nameCELE_Y75B12B.1Accession_evidenceNDBBX284605
Public_nameY75B12B.1
DB_infoDatabaseAceViewgene5P663
WormQTLgeneWBGene00013567
WormFluxgeneWBGene00013567
NDBlocus_tagCELE_Y75B12B.1
PanthergeneCAEEL|WormBase=WBGene00013567|UniProtKB=C8TDI7
familyPTHR23015
NCBIgene190716
RefSeqproteinNM_001269727.3
NM_001373163.2
NM_001269726.2
TrEMBLUniProtAccQ9XWB8
C8TDI7
H2KMK2
UniProt_GCRPUniProtAccC8TDI7
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:55WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar01493075
WBVar00478539
WBVar01072190
WBVar00478540
WBVar01072191
WBVar01072192
WBVar00478541
WBVar00478542
WBVar01072193
WBVar01072194
WBVar00478543
WBVar01828428
WBVar00591322
WBVar00591326
WBVar01800235
WBVar01463312
WBVar00018955
WBVar00018960
WBVar01744791
WBVar00018965
WBVar01775751
WBVar01500212
WBVar01500213
WBVar01499299
WBVar01499316
RNASeq_FPKM (74)
OrthologWBGene00078861Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00084345Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00065773Caenorhabditis remaneiFrom_analysisInparanoid_8
chrV_pilon.g16725Caenorhabditis elegansFrom_analysisWormBase-Compara
Paralog (211)
Structured_descriptionConcise_descriptionY75B12B.1 encodes a probable transposase, with many C. elegans paralogsand distant similarity to rotifer and insect transposases; Y75B12B.1 hasno known function in mass RNAi assays; Y75B12B.1 mRNA is stabilized bybound GLD-1.Paper_evidenceWBPaper00006534
Curator_confirmedWBPerson567
Date_last_updated07 Apr 2007 00:00:00
Automated_descriptionEnriched in germ line; neurons; and retrovesicular ganglion based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; dpy-10; and daf-12 based on microarray; tiling array; and RNA-seq studies. Is affected by eight chemicals including rotenone; manganese chloride; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain and HTH domain in Mos1 transposase.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY75B12B.1a
Y75B12B.1b
Y75B12B.1c
Corresponding_CDS_historyY75B12B.1:wp156
Corresponding_transcriptY75B12B.1a.1
Y75B12B.1a.2
Y75B12B.1a.3
Y75B12B.1b.1
Y75B12B.1c.1
Associated_featureWBsf1002253
WBsf1020991
WBsf233008
WBsf233009
Experimental_infoRNAi_resultWBRNAi00021426Inferred_automaticallyRNAi_primary
WBRNAi00058419Inferred_automaticallyRNAi_primary
WBRNAi00062473Inferred_automaticallyRNAi_primary
WBRNAi00037834Inferred_automaticallyRNAi_primary
WBRNAi00092488Inferred_automaticallyRNAi_primary
Expr_patternExpr16338
Expr1023086
Expr1036063
Expr1161837
Expr2008400
Expr2026641
Drives_constructWBCnstr00029598
WBCnstr00042917
Construct_productWBCnstr00029598
Microarray_results (21)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032097:CGH-1-associated-mRNA
WBPaper00032479:CB4856vsN2_LifeStageProfile_Variation
WBPaper00037682:sma-2_sma-4_downregulated
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:rising_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
WBPaper00045316:prg-1_downregulated_L3
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Oogenic
WBPaper00045618:puf-8_downregulated
WBPaper00045729:gld-2(RNAi)_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00046499:AMPK_regulated
WBPaper00048611:MnCl2_downregulated
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_3
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_100-cell-embryo
WBPaper00050163:chd-3(eh4)_downregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4)_downregulated_100-cell-embryo
WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1
WBPaper00050225:flp-6(RNAi)_downregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:downregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051039:germline_enriched
WBPaper00051558:fog-2(q71)_regulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053295:lin-22(icb38)_downregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:lin-15B(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_starved-L1_Truseq
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053599:female_vs_male_upregulated
WBPaper00053599:mitosis_vs_meiosis_downregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_downregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00055049:S.gordonii_downregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin_upregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055648:germline_expressed
WBPaper00055804:FBF-1-FBF-2-associated_oogenic-enriched
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056161:male_enriched_siRNA
WBPaper00056284:ints-5(RNAi)_downregulated
WBPaper00056290:hsp-6(mg585)_downregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00057154:HeatShock_downregulated_mRNA
WBPaper00057288:Cold_downregulated_transcript
WBPaper00058955:heatshock_upregulated_CE
WBPaper00059027:neuron-synapses_enriched
WBPaper00059440:LAG-1_interacting_germline
WBPaper00059440:LAG-1_interacting_WholeAnimal
WBPaper00059739:hira-1(gk835598)_upregulated_L4
WBPaper00059763:neuron_expressed
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060871:M.humicola-infection_12h_regulated
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061274:hypergravity_10xg_upregulated
WBPaper00061274:hypergravity_15xg_upregulated
WBPaper00061340:AIY
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061527:T24D1.3-egg-1
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062118:neural-HSF-1_upregulated
WBPaper00062146:MOG-7-degron_2h_regulated
WBPaper00062446:nhr-8(hd117)_downregulated
WBPaper00062497:xpf-1(tm2842)_downregulated
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
WBPaper00064532:pals-25(icb98)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00064727:daf-2(e1370)_downregulated
WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_20C
WBPaper00065158:25C_vs_15C_upregulated_WholeAnimal
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4386_cluster_3_2
cgc4489_group_9
WBPaper00005124:estrogen_10-5M_regulated
WBPaper00025141:unc-4::GFP_Enriched_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00027758:Regulated_genes_not_in_group
WBPaper00030839:Embryo_A_Class
WBPaper00030985:Serratia_marcesens_upregulated
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_B
WBPaper00037147:heatshock_upregulated
WBPaper00037611:RNP-8-associated
WBPaper00037901:GLD-1_mRNA_targets
WBPaper00041174:environmental
WBPaper00041174:genotypic
WBPaper00041174:genotypic_and_environmental
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00056330:mrps-5(RNAi)_downregulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
[cgc6390]:Cluster_E
[cgc6390]:oogenesis-enriched
SAGE_tagSAGE:tgttctctacgaggtgtStrandSense
Unambiguously_mapped
SAGE:tgcgaaggaaggctggaStrandAntisense
SAGE:ttttcttccggatttttStrandAntisense
SAGE:ttttcttccgStrandAntisense
SAGE:tgcgaaggaaStrandAntisense
SAGE:cataatcgggaattcgaStrandSense
Unambiguously_mapped
SAGE:atttgtgtctcgatatgStrandSense
Unambiguously_mapped
SAGE:atttgtgtctStrandSense
Unambiguously_mapped
SAGE:ggaaaaccagggaaagaStrandAntisense
SAGE:cataatcgggStrandSense
Unambiguously_mapped
Interaction (221)
Map_infoPositivePositive_cloneY75B12BInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionV7.50751
ReferenceWBPaper00006534
MethodGene