WormBase Tree Display for Gene: WBGene00011793

WBGene00011793 SMap: S_parent: Sequence: T16A9
  Identity: Version: 1
    Name: Sequence_name: T16A9.3
      Molecular_name: T16A9.3
        T16A9.3.1
        CE43662
        T16A9.3.2
        T16A9.3.3
      Other_name: CELE_T16A9.3 Accession_evidence: NDB BX284605
      Public_name: T16A9.3
    DB_info: Database: AceView gene 5O689
        WormQTL gene WBGene00011793
        WormFlux gene WBGene00011793
        NDB locus_tag CELE_T16A9.3
        NCBI gene 188549
        RefSeq protein NM_074116.4
        TREEFAM TREEFAM_ID TF316000
        TrEMBL UniProtAcc Q22522
        UniProt_GCRP UniProtAcc Q22522
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar00015350
      WBVar02113981
      WBVar02150128
      WBVar01975419
      WBVar01975420
      WBVar01901097
      WBVar01744368
      WBVar01871523
      WBVar01744369
      WBVar01744370
      WBVar01871524
      WBVar01744371
      WBVar01744372
      WBVar01744373
      WBVar01744374
      WBVar01744375
      WBVar01744376
      WBVar01744377
      WBVar01710416
      WBVar01066000
      WBVar01066001
      WBVar01066002
      WBVar01066003
      WBVar01066004
      WBVar01066005
      WBVar01066006
      WBVar01066007
      WBVar01066008
      WBVar01066009
      WBVar01066010
      WBVar01066011
      WBVar00272658
      WBVar01066012
      WBVar01066013
      WBVar01066014
      WBVar01066015
      WBVar01066016
      WBVar01066017
      WBVar01066018
      WBVar01499621
      WBVar01489502
      WBVar02024596
      WBVar02024597
      WBVar02062190
      WBVar02024598
      WBVar02024599
      WBVar02062191
      WBVar00476436
      WBVar00476437
      WBVar00476438
      WBVar00476439
      WBVar02076136
      WBVar00476440
      WBVar00476441
      WBVar00476442
      WBVar02118521
      WBVar02080250
      WBVar01500212
      WBVar01500213
      WBVar02137531
      WBVar01499299
      WBVar01499316
    RNASeq_FPKM (74)
    Ortholog (23)
    Paralog (16)
    Structured_description: Automated_description: Enriched in several structures, including ABaraapapaa; ABaraapppaa; XXX cell; rectal epithelial cell; and sensory neurons based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; hsf-1; and clk-1 based on RNA-seq and microarray studies. Is affected by ten chemicals including rotenone; Sodium Chloride; and Rifampin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SKP1/BTB/POZ domain superfamily; Protein of unknown function DUF1265; and Protein of unknown function (DUF1265). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T16A9.3
    Corresponding_CDS_history: T16A9.3:wp138
      T16A9.3:wp201
    Corresponding_transcript: T16A9.3.1
      T16A9.3.2
      T16A9.3.3
    Other_sequence: FG647762.1
    Associated_feature: WBsf662070
      WBsf1001960
      WBsf232892
  Experimental_info: RNAi_result: WBRNAi00053404 Inferred_automatically: RNAi_primary
      WBRNAi00035604 Inferred_automatically: RNAi_primary
      WBRNAi00018760 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1019251
      Expr1156978
      Expr2006205
      Expr2024422
    Drives_construct: WBCnstr00030382
    Construct_product: WBCnstr00030382
    Microarray_results (16)
    Expression_cluster: WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:bodywall-muscle_larva_SelectivelyEnriched
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044743:wdr-23_neuron_upregulated
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045521:Spermatogenic
      WBPaper00045774:clk-1_upregulated
      WBPaper00046024:sleep_upregulated_oscillating
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:hypodermis_enriched
      WBPaper00050990:hypodermis_expressed
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot267)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053771:up_at_3h-NaCl
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055648:sperm_expressed
      WBPaper00055827:daf-2(e1370)_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056443:DietaryRestriction_downregulated
      WBPaper00056446:hsb-1(cg116)_downregulated
      WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay4
      WBPaper00056855:his-72(uge40)_upregulated
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058598:spn-4(tm291)_downregulated
      WBPaper00058725:sftb-1(cer6)_downregulated
      WBPaper00058969:RIS_depleted
      WBPaper00059421:daf-1(m40)_upregulated
      WBPaper00059754:E.faecalis_OG1RF_upregulated
      WBPaper00059754:P.aeruginosa_PA14_upregulated
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061340:K_Kprime
      WBPaper00061340:NSM_parent
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:Y40H4A.2-ZK1053.2
      WBPaper00061651:XXX_enriched
      WBPaper00061753:csr-1(tor159)_downregulated_25C
      WBPaper00061995:mter-4(syb3662syb3403)_upregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062456:doxycycline_upregulated_CB4856_transcript
      WBPaper00062456:doxycycline_upregulated_N2_transcript
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
      WBPaper00065158:AFD_enriched
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065841:4_0
      WBPaper00065841:7_0
      WBPaper00065841:7_1
      WBPaper00065841:7_2
      WBPaper00065841:40_0
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      cgc4489_group_21
      WBPaper00005124:progesterone_10-7M_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00040963:TA300_up
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00046548:dafachronic-acid_downregulated
      WBPaper00048637:lin-35(n745)_starvation_upregulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc6390]:spermatogenesis-enriched
    Interaction: WBInteraction000151339
      WBInteraction000175940
      WBInteraction000213511
      WBInteraction000262932
      WBInteraction000263090
      WBInteraction000266391
      WBInteraction000366972
      WBInteraction000392439
      WBInteraction000399877
      WBInteraction000567542
  Map_info: Positive: Positive_clone: T16A9 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 6.20027
  Method: Gene