WormBase Tree Display for Gene: WBGene00011015

WBGene00011015 SMap: S_parent: Sequence: R04F11
  Identity: Version: 1
    Name: Sequence_name: R04F11.2
      Molecular_name: R04F11.2
        R04F11.2.1
        CE06233
        R04F11.2.2
        R04F11.2.3
      Other_name: CELE_R04F11.2 Accession_evidence: NDB BX284605
      Public_name: R04F11.2
    DB_info: Database: AceView gene 5M799
        WormQTL gene WBGene00011015
        WormFlux gene WBGene00011015
        NDB locus_tag CELE_R04F11.2
        Panther gene CAEEL|WormBase=WBGene00011015|UniProtKB=Q21732
          family PTHR12427
        NCBI gene 179690
        RefSeq protein NM_001383420.2
        TREEFAM TREEFAM_ID TF314719
        TrEMBL UniProtAcc Q21732
        UniProt_GCRP UniProtAcc Q21732
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar02061336
      WBVar02061337
      WBVar01499547
      WBVar01743667
      WBVar01054223
      WBVar01054224
      WBVar01054225
      WBVar01054226
      WBVar01054227
      WBVar01054228
      WBVar01054229
      WBVar01054230
      WBVar01054231
      WBVar01054232
      WBVar00245777
      WBVar00472553
      WBVar00472554
      WBVar00472555
      WBVar02024405
      WBVar00007210
      WBVar00252027
      WBVar01867012
      WBVar01867013
      WBVar01500212
      WBVar01500213
      WBVar01499299
      WBVar01484772
      WBVar01484773
      WBVar01499316
    RNASeq_FPKM (74)
    GO_annotation (13)
    Ortholog (30)
    Structured_description: Automated_description: Predicted to enable proton transmembrane transporter activity. Predicted to be involved in proton motive force-driven ATP synthesis and proton transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase complex. Is an ortholog of human ATP5ME (ATP synthase membrane subunit e). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R04F11.2
    Corresponding_transcript: R04F11.2.1
      R04F11.2.2
      R04F11.2.3
    Other_sequence (83)
    Associated_feature: WBsf647358
      WBsf232631
      WBsf232632
      WBsf232633
      WBsf232634
  Experimental_info: RNAi_result: WBRNAi00109859 Inferred_automatically: RNAi_primary
      WBRNAi00009031 Inferred_automatically: RNAi_primary
      WBRNAi00034588 Inferred_automatically: RNAi_primary
      WBRNAi00051250 Inferred_automatically: RNAi_primary
      WBRNAi00090951 Inferred_automatically: RNAi_primary
      WBRNAi00026019 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024547
      Expr1034828
      Expr1154952
      Expr2005374
      Expr2023595
    Drives_construct: WBCnstr00030990
    Construct_product: WBCnstr00030990
    Microarray_results (29)
    Expression_cluster: WBPaper00028451:Low_abundance_spermatogenesis_enriched
      WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00032528:L3_enriched
      WBPaper00033065:clk-1(qm30)_upregulated
      WBPaper00035073:mitochondria_protein
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038118:aak-2(gt33)_downregulated
      WBPaper00038289:oocyte_protein
      WBPaper00040209:B.thuringiensis_downregulated_MY15
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00040965:lipid-droplet_associated_protein
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044746:aging_downregulated_Day5
      WBPaper00044746:aging_downregulated_HeatShock
      WBPaper00045521:Gender_Neutral
      WBPaper00045974:NSM_enriched_DSN-treated_RNAseq
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00046303:P.aeruginosa_downregulated_protein
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050698:DEP-1_interacting
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051245:cytoplasm_specific
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
      WBPaper00051265:F4_morc-1(tm6048)_downregulated
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053615:SMO-1_target
      WBPaper00053713:Pheromone-induced_postdauer_vs_control_downregulated
      WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055049:S.gordonii_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00056900:PID-3_interacting
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058725:sftb-1(cer6)_downregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059763:neuron_expressed
      WBPaper00059895:wounding_downregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060871:M.humicola-extract_4h_regulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061377:MYRF-1_interacting
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061478:SUMO-conjugated_protein
      WBPaper00061527:F45H10.2-R53.4_21676
      WBPaper00061651:Distal_tip_cell_enriched
      WBPaper00061651:Gonadal_sheath_cell_enriched
      WBPaper00061651:NSM_enriched
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062554:MAGU-2_interacting
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064005:starvation_downregulated_aptf-1(gk794)_mRNA
      WBPaper00064055:trl-1(cas1077)_downregulated_non-starved
      WBPaper00064055:trl-1(cas1077)_downregulated_starved
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064201:SNA-3_interacting
      WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
      WBPaper00064716:paraquat_downregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065373:Cisplatin_downregulated_WT
      cgc4386_cluster_1_5
      cgc4489_group_3
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_G
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040963:TA300_up
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00044091:Bpseudomallei_repressed_12h
      WBPaper00048989:eat-2(ad465)_downregulated_in-DMSO
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
    Interaction (78)
  Map_info: Positive: Positive_clone: R04F11 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 3.9989
  Reference: WBPaper00028999
    WBPaper00033540
  Method: Gene