WormBase Tree Display for Gene: WBGene00008169

WBGene00008169 SMap: S_parent: Sequence: C48B4
  Identity: Version: 1
    Name: Sequence_name: C48B4.6
      Molecular_name: C48B4.6
        C48B4.6.1
        CE00482
      Other_name: CELE_C48B4.6 Accession_evidence: NDB BX284603
      Public_name: C48B4.6
    DB_info: Database: AceView gene 3K646
        WormQTL gene WBGene00008169
        WormFlux gene WBGene00008169
        NDB locus_tag CELE_C48B4.6
        NCBI gene 183566
        RefSeq protein NM_066708.4
        SwissProt UniProtAcc P34360
        TREEFAM TREEFAM_ID TF322867
        UniProt_GCRP UniProtAcc P34360
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01500260
      WBVar00178056
      WBVar01499721
      WBVar01499774
      WBVar00405584
      WBVar00405585
      WBVar00405586
      WBVar00405587
      WBVar00602755
      WBVar00851169
      WBVar01490082
      WBVar00851170
      WBVar00851171
      WBVar00851172
      WBVar00851173
      WBVar00851174
      WBVar01701787
      WBVar00100921
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP3600
    Ortholog: WBGene00139994 Caenorhabditis brenneri From_analysis: TreeFam
      chrIII_pilon.g8648 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00008172 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00008173 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00008170 Caenorhabditis elegans From_analysis: TreeFam
    Structured_description: Automated_description: Enriched in Psub1; germ line; germline precursor cell; head mesodermal cell; and intestine based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by nine chemicals including hydrogen sulfide; rotenone; and stavudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Family of unknown function (DUF5373) and Protein of unknown function DUF5373. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C48B4.6
    Corresponding_transcript: C48B4.6.1
    Associated_feature: WBsf227314
  Experimental_info: RNAi_result: WBRNAi00012095 Inferred_automatically: RNAi_primary
      WBRNAi00029934 Inferred_automatically: RNAi_primary
      WBRNAi00042716 Inferred_automatically: RNAi_primary
      WBRNAi00061761 Inferred_automatically: RNAi_primary
      WBRNAi00006935 Inferred_automatically: RNAi_primary
      WBRNAi00042715 Inferred_automatically: RNAi_primary
      WBRNAi00006746 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1028920
      Expr1033549
      Expr1146707
      Expr2001734
      Expr2019962
    Drives_construct: WBCnstr00033184
    Construct_product: WBCnstr00033184
    Microarray_results (16)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032097:CGH-1-associated-mRNA
      WBPaper00033070:Rhine_downregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:germline-precursors_embryo_enriched
      WBPaper00037950:germline-precursors_embryo_SelectivelyEnriched
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00040285:H2S_24hr_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045050:csr-1(hypomorph)_downregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045774:clk-1_upregulated
      WBPaper00046691:P1_enriched
      WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
      WBPaper00048988:daf-2(e1370)_upregulated_neuron
      WBPaper00048988:daf-16(mu86)_downregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00050163:chd-3(eh4)_downregulated_100-cell-embryo
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053295:lin-22(icb38)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053321:embryo-to-L1_upregulated_WT_SMARTseq
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
      WBPaper00053810:clk-1(qm30)_upregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053814:15C_downregulated_OP50
      WBPaper00055103:thoc-5(wy822)_downregulated
      WBPaper00055354:Rapamycin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056284:ints-11(RNAi)_upregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056826:hmc_biased
      WBPaper00057041:spc-1(cas971)_upregulated
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060445:ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
      WBPaper00060886:spr-5(by101)_upregulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061274:hypergravity_10xg_upregulated
      WBPaper00061340:Germline
      WBPaper00061527:T22D1.5-inx-14
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066085:hda-3(ok1991)_downregulated
      WBPaper00066085:sin-3(tm1276)_upregulated
      cgc4386_cluster_4_2
      cgc4489_group_2
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00027111:rde-3(ne298)_upregulated
      WBPaper00028948:cep-1(gk138)+UV_upregulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_B
      WBPaper00037611:GLD-2-associated
      WBPaper00037611:RNP-8-associated
      WBPaper00040963:TA200_down
      WBPaper00040963:TA300_down
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_48h
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048637:lin-35(n745)_starvation_downregulated
      [cgc5767]:cluster_29
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(PC32)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
      [cgc6390]:oogenesis-enriched
    Interaction (21)
  Map_info: Positive: Positive_clone: C48B4 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III 0.603231
  Method: Gene