WormBase Tree Display for Gene: WBGene00007623

WBGene00007623 SMap: S_parent: Sequence: C16C10
  Identity: Version: 1
    Name: Sequence_name: C16C10.2
      Molecular_name: C16C10.2
        C16C10.2.1
        CE01493
      Other_name: CELE_C16C10.2 Accession_evidence: NDB BX284603
      Public_name: C16C10.2
    DB_info: Database: AceView gene 3F268
        WormQTL gene WBGene00007623
        WormFlux gene WBGene00007623
        NDB locus_tag CELE_C16C10.2
        Panther gene CAEEL|WormBase=WBGene00007623|UniProtKB=Q09462
          family PTHR12838
        NCBI gene 175536
        RefSeq protein NM_065434.7
        SwissProt UniProtAcc Q09462
        TREEFAM TREEFAM_ID TF314171
        UniProt_GCRP UniProtAcc Q09462
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar02131852
      WBVar00820322
      WBVar00820323
      WBVar00820324
      WBVar00820325
      WBVar00820326
      WBVar00820327
      WBVar00820328
      WBVar00820329
      WBVar00820330
      WBVar00820331
      WBVar00820332
      WBVar00820333
      WBVar00820334
      WBVar01667435
      WBVar02156388
      WBVar00395539
    RNASeq_FPKM (74)
    GO_annotation: 00054053
      00054054
      00054055
      00054056
      00054057
      00054058
      00115722
      00115723
    Contained_in_operon: CEOP3160
    Ortholog (35)
    Structured_description: Automated_description: Predicted to be involved in translation. Predicted to be located in nucleolus. Predicted to be part of small-subunit processome. Is an ortholog of human UTP11 (UTP11 small subunit processome component). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C16C10.2
    Corresponding_transcript: C16C10.2.1
    Other_sequence (36)
    Associated_feature: WBsf226484
      WBsf226485
      WBsf226486
  Experimental_info: RNAi_result (17)
    Expr_pattern: Expr1011251
      Expr1033289
      Expr1144724
      Expr2000851
      Expr2019068
    Drives_construct: WBCnstr00033600
    Construct_product: WBCnstr00033600
    Microarray_results (23)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032425:up_in_zfp-1
      WBPaper00033070:Elbe_downregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:epidermis_nucleus_expressed
      WBPaper00051245:nucleus_specific
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00055226:ADR-2_target_adr-1(tm668)
      WBPaper00055226:ADR-2_target_N2
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00059027:neuron-synapses_enriched
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061340:M_cell
      WBPaper00061527:B0511.6_180-Y54E10BR.4_1509
      WBPaper00061527:F54E7.8-orc-5_6376
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062293:isp-1(qm150)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062554:MAGU-2_interacting
      WBPaper00063930:BRD-1_interacting
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065945:epidermis-rpoa-2(-)_downregulated_protein
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4386_cluster_4_4
      cgc4489_group_1
      WBPaper00025032:cluster_40
      WBPaper00025032:cluster_121
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026980:intestine_enriched
      WBPaper00032165:differentially_expressed_with_age_medoid_7
      WBPaper00035479:daf-16(RNAi)_upregulated
      WBPaper00035560:ahr-1_downregulated
      WBPaper00036286:Pattern_B
      WBPaper00037695:LD_3-day
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00048637:lin-35(n745)_starvation_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
      [cgc6390]:Cluster_F
      [cgc6390]:oogenesis-enriched
    Interaction (166)
  Map_info: Positive: Positive_clone: C16C10 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III -3.71156
  Reference: WBPaper00024200
    WBPaper00038491
    WBPaper00041771
    WBPaper00055090
  Method: Gene