WormBase Tree Display for Gene: WBGene00007170

WBGene00007170 SMap: S_parent: Sequence: B0393
  Identity: Version: 1
    Name: Sequence_name: B0393.5
      Molecular_name: B0393.5
        B0393.5.1
        CE43273
      Other_name: CELE_B0393.5 Accession_evidence: NDB BX284603
      Public_name: B0393.5
    DB_info: Database: AceView gene 3F865
        WormQTL gene WBGene00007170
        WormFlux gene WBGene00007170
        NDB locus_tag CELE_B0393.5
        Panther gene CAEEL|WormBase=WBGene00007170|UniProtKB=Q17494
          family PTHR24039
        NCBI gene 175632
        RefSeq protein NM_065581.5
        TREEFAM TREEFAM_ID TF315546
        TrEMBL UniProtAcc Q17494
        UniProt_GCRP UniProtAcc Q17494
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:47 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar00262777
      WBVar00823784
      WBVar00396644
      WBVar00396645
      WBVar00823785
      WBVar00396646
      WBVar00823786
      WBVar00823787
      WBVar00396647
      WBVar00396648
      WBVar00823788
      WBVar00396649
      WBVar01837507
      WBVar00396650
      WBVar00396651
      WBVar00396652
      WBVar00396653
      WBVar02051176
      WBVar01893295
      WBVar01710001
      WBVar01785622
      WBVar01785623
      WBVar01785624
      WBVar01785625
      WBVar01785626
      WBVar01785627
      WBVar01785628
      WBVar02053248
      WBVar00602627
      WBVar01628470
      WBVar02131927
      WBVar02078521
      WBVar00249787
      WBVar01445451
      WBVar01995069
      WBVar01656560
      WBVar01656561
      WBVar01656562
      WBVar00823726
      WBVar01962707
      WBVar00823727
      WBVar00823728
      WBVar00823729
      WBVar00823730
      WBVar00823731
      WBVar00563147
      WBVar00823732
      WBVar00823733
      WBVar00823734
      WBVar00823735
      WBVar00823736
      WBVar01644279
      WBVar00823737
      WBVar00823738
      WBVar01644280
      WBVar00823739
      WBVar01644281
      WBVar00823740
      WBVar01644282
      WBVar00823741
      WBVar00823742
      WBVar00823743
      WBVar02034192
      WBVar00823744
      WBVar00823745
      WBVar02034193
      WBVar00823746
      WBVar00823747
      WBVar00823748
      WBVar00823749
      WBVar00823750
      WBVar00823751
      WBVar00823752
      WBVar00823753
      WBVar00823754
      WBVar00823755
      WBVar00823756
      WBVar00823757
      WBVar00823758
      WBVar00823759
      WBVar00823760
      WBVar00823761
      WBVar00823762
      WBVar00823763
      WBVar00823764
      WBVar00823765
      WBVar00823766
      WBVar00823767
      WBVar00823768
      WBVar00254662
      WBVar00823769
      WBVar00823770
      WBVar00823771
      WBVar00823772
      WBVar00823773
      WBVar00259823
      WBVar00823774
      WBVar00823775
      WBVar00823776
      WBVar00396636
      WBVar00823777
      WBVar00396637
      WBVar00259826
      WBVar00823778
      WBVar00396638
      WBVar00396639
      WBVar00823779
      WBVar00091970
      WBVar00823780
      WBVar00396640
      WBVar00823781
      WBVar00396641
      WBVar00823782
      WBVar00396642
      WBVar00396643
      WBVar00823783
    Strain: WBStrain00031569
    RNASeq_FPKM (74)
    GO_annotation: 00058279
      00058280
      00058281
      00058282
      00115385
      00115386
    Ortholog (11)
    Paralog: WBGene00003173 Caenorhabditis elegans From_analysis: Panther
      WBGene00003482 Caenorhabditis elegans From_analysis: Panther
      WBGene00003497 Caenorhabditis elegans From_analysis: Panther
      WBGene00022816 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Predicted to enable calcium ion binding activity. Predicted to be an extracellular matrix structural constituent. Predicted to be involved in cell-matrix adhesion. Predicted to be located in collagen-containing extracellular matrix and membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: B0393.5
    Corresponding_CDS_history: B0393.5:wp196
    Corresponding_transcript: B0393.5.1
    Other_sequence (11)
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00009744 Inferred_automatically: RNAi_primary
      WBRNAi00068245 Inferred_automatically: RNAi_primary
      WBRNAi00039010 Inferred_automatically: RNAi_primary
      WBRNAi00039011 Inferred_automatically: RNAi_primary
      WBRNAi00000448 Inferred_automatically: RNAi_primary
      WBRNAi00005018 Inferred_automatically: RNAi_primary
      WBRNAi00006794 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016853
      Expr1033085
      Expr1143175
      Expr2000169
      Expr2018387
    Drives_construct: WBCnstr00033950
    Construct_product: WBCnstr00033950
    Microarray_results (19)
    Expression_cluster: WBPaper00035197:fer-1_downregulated
      WBPaper00036738:500uM_Heme_downregulated
      WBPaper00037950:hypodermis_embryo_enriched
      WBPaper00037950:hypodermis_embryo_SelectivelyEnriched
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00042165:let-7_downregulated
      WBPaper00042477:prp-8(RNAi)_downregulated_RNAseq
      WBPaper00042477:rsr-2(RNAi)_downregulated_RNAseq
      WBPaper00043945:MeHg_upregulated
      WBPaper00044037:eat-2_upregulated
      WBPaper00044260:1-methylnicotinamide_downregulated
      WBPaper00044260:nicotic-acid_downregulated
      WBPaper00044316:CH3HgCl_7.5uM_downregulated
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044760:somatic_specific
      WBPaper00045257:bar-1(ga80)_downregulated
      WBPaper00045521:Oogenic
      WBPaper00045774:clk-1_downregulated
      WBPaper00046012:tdp-1(ok803)_upregulated
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_4
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
      WBPaper00050163:let-418(RNAi)_upregulated_100-cell-embryo
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050743:elli-1(sam-3)_downregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050903:mir-35-41(nDf50)_25C_downregulated
      WBPaper00050990:hypodermis_enriched
      WBPaper00050990:hypodermis_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051352:Long-Term-Association-Memory_upregulated
      WBPaper00051404:alg-1(gk214)_downregulated
      WBPaper00051404:alg-2(ok304)_downregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053388:dauer_regulated_Cluster3
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00054192:cold-shock_upregulated
      WBPaper00054410:set-9(rw5)_downregulated
      WBPaper00054410:set-26(tm2467)_downregulated
      WBPaper00054493:hpl-2(tm1489)_upregulated
      WBPaper00055013:hmg-4(RNAi)_downregulated
      WBPaper00055013:spt-16(RNAi)_downregulated
      WBPaper00055334:DLC-1_interacting
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055941:atfs-1(et15)_upregulated
      WBPaper00055941:nuo-6(qm200)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_L4
      WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
      WBPaper00056169:rrf-3(pk1426)_upregulated_L1
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056290:mdt-15(mg584)_upregulated
      WBPaper00056293:rpl-5(0)-rpl-33(0)_downregulated
      WBPaper00056330:glycine_downregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056855:his-72(uge40)_upregulated
      WBPaper00057041:spc-1(cas971)_upregulated
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
      WBPaper00057068:numr-1(RNAi)_downregulated
      WBPaper00057347:nhr-14(tm1473)_downreglated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058969:RIS_depleted
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059231:alh-6(lax105)_L4_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00059735:glucose_upregulated_lpin-1(RNAi)
      WBPaper00059735:glucose_upregulated_N2
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060273:vrk-1(RNAi)_downregulated
      WBPaper00060526:plp-1(ok2155)_downregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060886:spr-5(by101)_upregulated
      WBPaper00061007:HB101_upregulated
      WBPaper00061007:HB115_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061007:X.citri_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061274:hypergravity_15xg_upregulated
      WBPaper00061340:g2
      WBPaper00061340:g2_parent
      WBPaper00061340:hyp1_hyp2
      WBPaper00061340:hyp7_AB_lineage
      WBPaper00061340:hyp7_C_lineage
      WBPaper00061340:Hypodermis
      WBPaper00061340:ILso
      WBPaper00061340:MC
      WBPaper00061340:PVT
      WBPaper00061340:P_cell
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061527:mlt-9_22518-F33D4.6_14044
      WBPaper00061651:AFD_enriched
      WBPaper00061952:daf-18(nr2037)_upregulated
      WBPaper00062156:jmjd-1.2(zr1010)_upregulated
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00062440:crh-1(syb385)_downregulated
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062534:fat-P-80_downregulated
      WBPaper00062534:fat-P-80_downregulated_ech-6(RNAi)
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00062590:Aging_downregulated_neuron
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
      WBPaper00062672:let-418(n3536)_upregulated
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064315:mes-3(bn199)_downregulated_EGCs
      WBPaper00064315:mes-4(bn73)_downregulated_EGCs
      WBPaper00064532:pals-25(icb98)_downregulated
      WBPaper00064539:nhr-114(gk849)_downregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065029:cadmium_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
      WBPaper00065560:E.coli-HB101_downregulated_F3
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065749:endu-2(tm4977)_upregulated
      WBPaper00065835:Day11_vs_Day1_upregulated
      WBPaper00065841:30_5
      WBPaper00065841:50_0
      WBPaper00065841:82_0
      WBPaper00065841:82_1
      WBPaper00065841:90_0
      WBPaper00065841:117_0
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065984:pals-17(syb3980)_downregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066004:tdp-1(csb38)_upregulated
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_8
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026952:class_E
      WBPaper00031703:heme_responsive_8
      WBPaper00032165:differentially_expressed_with_age_medoid_5
      WBPaper00032948:FedUp
      WBPaper00032948:MoltOssilate
      WBPaper00034739:N2lessDR1350
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036130:mir-243_up_regulated
      WBPaper00036286:Pattern_E
      WBPaper00038172:aak-2overexpression_down_regulated
      WBPaper00038172:crh-1null_down_regulated
      WBPaper00038172:tax-6null_down_regulated
      WBPaper00038304:octr-1_regulated
      WBPaper00040876:mir-35_downregulated
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00046083:oga-1(ok1207)_OP50_downregulated
      WBPaper00046083:ogt-1(ok1474)_OP50_downregulated
      WBPaper00046083:pmk-1(km25)_OP50_downregulated
      WBPaper00046548:dafachronic-acid_upregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc6390]:Cluster_B
    Interaction (20)
  Map_info: Positive: Positive_clone: B0393 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III -2.56131
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00065560
  Method: Gene