WormBase Tree Display for CDS: R03D7.1
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R03D7.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | R03D7 | |||
Structure | Source_exons | 1 | 126 | |||
267 | 513 | |||||
566 | 658 | |||||
800 | 1165 | |||||
1215 | 2460 | |||||
2506 | 3142 | |||||
3195 | 3479 | |||||
3523 | 4185 | |||||
4234 | 4320 | |||||
DB_info | Database | KEGG | KEGG_id | 2.1.1.13 | ||
SwissProt | UniProtAcc | Q09582 | ||||
UniProt | UniProtAcc | Q09582 | ||||
UniProt_GCRP | UniProtAcc | Q09582 | ||||
AlphaFold | entry | Q09582 | ||||
NCBI_protein | GI_number | GI:3878791 | ||||
TREEFAM | TREEFAM_ID | TF312829 | ||||
Protein_id | CHROMOSOME_II | CAA86855 | 1 | |||
DB_remark | METR-1 protein; contains similarity to Pfam domains PF00809 (Pterin binding enzyme), PF02310 (B12 binding domain), PF02574 (Homocysteine S-methyltransferase), PF02607 (B12 binding domain), PF02965 (Vitamin B12 dependent methionine synthase, activation domain); contains similarity to Interpro domains IPR004223 (Vitamin B12-dependent methionine synthase, activation domain), IPR037010 (Vitamin B12-dependent methionine synthase, activation domain superfamily), IPR003759 (Cobalamin (vitamin B12)-binding module, cap domain), IPR036594 (Methionine synthase domain), IPR011822 (Cobalamin-dependent methionine synthase), IPR036724 (Cobalamin-binding domain superfamily), IPR036589 (Homocysteine-binding domain superfamily), IPR003726 (Homocysteine-binding domain), IPR011005 (Dihydropteroate synthase-like superfamily), IPR006158 (Cobalamin (vitamin B12)-binding domain), IPR000489 (Pterin-binding domain) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding (2) | |||||
Visible | Gene | WBGene00010988 | ||||
Corresponding_transcript | R03D7.1.1 | |||||
Corresponding_protein | CE01609 | |||||
Corresponding_PCR_product (3) | ||||||
Corresponding_oligo_set (14) | ||||||
Matching_cDNA (133) | ||||||
RNAi_result | WBRNAi00071221 | |||||
WBRNAi00034551 | ||||||
WBRNAi00090587 | ||||||
WBRNAi00051170 | ||||||
WBRNAi00106971 | ||||||
WBRNAi00017346 | ||||||
Microarray_results (15) | ||||||
Brief_identification | Probable methionine synthase | Accession_evidence | UniProt | SP:Q09582 | ||
RNASeq_FPKM (74) | ||||||
Associated_feature | WBsf003893 | |||||
Method | curated |