WormBase Tree Display for CDS: F53G2.12b
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F53G2.12b | SMap | S_parent | Sequence | F53G2 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 39 | |||
DB_info | Database | TrEMBL | UniProtAcc | A0A2K5ATR1 | ||
UniProt | UniProtAcc | A0A2K5ATR1 | ||||
AlphaFold | entry | A0A2K5ATR1 | ||||
NCBI_protein | GI_number | GI:1394370990 | ||||
Protein_id | CHROMOSOME_II | SPC47297 | 2 | |||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Curator_confirmed | WBPerson4025 | ||||
Visible | Gene | WBGene00302998 | ||||
Corresponding_transcript | F53G2.12b.1 | |||||
Corresponding_protein | CE52616 | |||||
Corresponding_PCR_product | mv_F53G2.b | |||||
Brief_identification | Complex1_LYR_dom domain-containing protein | Accession_evidence | UniProt | TR:A0A2R8F5A8 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 13 Dec 2017 10:22:36 | WBPerson4025 | ||||
Remark | This small isoform was added to represent the small open reading frame (sORF) described in the database 'sORF.org'. It is possible that this is a 'micro ORF'. No initial Methionine codon is present; it is possible that this uses a non-canonical initiation codon. | Paper_evidence | WBPaper00053415 | |||
Curator_confirmed | WBPerson4025 | |||||
[180219 gw3] This Gene has been split away from F53G2.7 because it is a dicistronic mRNA operon. | Curator_confirmed | WBPerson4025 | ||||
[180510 gw3] This has a non-canonical initiation site. | ||||||
[180510 gw3] This is a possible 'micro ORF'. | ||||||
This starts with a codon for Leucine which is an acceptable alternative initiation codon in the NCBI translation table | ||||||
Method | curated |