WormBase Tree Display for CDS: CBG19728
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| CBG19728 | SMap | S_parent | Sequence | cb25.fpc4140 | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 29 | ||
| 73 | 148 | ||||
| 202 | 327 | ||||
| 393 | 668 | ||||
| 1786 | 2014 | ||||
| 2062 | 2584 | ||||
| 2966 | 3208 | ||||
| 3254 | 3419 | ||||
| DB_info | Database | UniProt | UniProtAcc | A8XWG6 | |
| UniProtId | A8XWG6_CAEBR | ||||
| TrEMBL | UniProtAcc | A8XWG6 | |||
| UniProt_GCRP | UniProtAcc | A8XWG6 | |||
| Protein_id | cb25.fpc4140 | CAP36985 | 2 | ||
| DB_remark | CBR-UNC-122 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF02191 (Olfactomedin-like domain); contains similarity to Interpro domains IPR003112 (Olfactomedin-like domain), IPR008160 (Collagen triple helix repeat) | ||||
| Origin | From_laboratory | CB | |||
| Species | Caenorhabditis briggsae | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Visible | Gene | WBGene00038898 | |||
| Corresponding_transcript | CBG19728.1 | ||||
| Corresponding_protein | CBP32235 | ||||
| Corresponding_oligo_set | GPL8303_CB6_WBGene00038898_A | ||||
| GPL8303_CB6_WBGene00038898_B | |||||
| GPL8303_CB6_WBGene00038898_C | |||||
| GPL8303_CB6_WBGene00038898_D | |||||
| GPL8303_CB6_WBGene00038898_E | |||||
| GPL14143_CBG19728_541-600_0.536_234_C | |||||
| GPL14143_CBG19728_1008-1067_0.906_25_B | |||||
| GPL14143_CBG19728_1211-1270_0.909_22_A | |||||
| Matching_cDNA | briggsae_GG3701|c1_g2_i1 | Inferred_automatically | transcript_builder.pl | ||
| briggsae_GG3701|c1_g1_i1 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL8303_CB6_WBGene00038898_A | ||||
| GPL8303_CB6_WBGene00038898_B | |||||
| GPL8303_CB6_WBGene00038898_C | |||||
| GPL8303_CB6_WBGene00038898_D | |||||
| GPL8303_CB6_WBGene00038898_E | |||||
| GPL14143_CBG19728_541-600_0.536_234_C | |||||
| GPL14143_CBG19728_1008-1067_0.906_25_B | |||||
| GPL14143_CBG19728_1211-1270_0.909_22_A | |||||
| RNASeq_FPKM (9) | |||||
| Last_reviewed | 31 Aug 2016 10:21:14 | WBPerson4025 | |||
| Remark | [gffnote] orthologous to F11C3.2 by best mutual match (eval=0) ; Ortholog F11C3.2 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP04615 ; Gene WBGene00038898 | ||||
| [20080722 tb] Modified based on Jigsaw gene ContigchrI.briggsae.jigsaw.2315 | |||||
| [160826 gw3] The structure of this CDS has been confirmed by the Trinity model 'briggsae_GG3701|c1_g1_i1-chrI-1b.extended'. | Curator_confirmed | WBPerson4025 | |||
| Method | curated |
