WormBase Tree Display for CDS: ZK112.7
expand all nodes | collapse all nodes | view schema
| ZK112.7 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK112 | |||
| Structure | Source_exons (22) | |||||
| DB_info | Database | SwissProt | UniProtAcc | P34616 | ||
| UniProt | UniProtAcc | P34616 | ||||
| UniProt_GCRP | UniProtAcc | P34616 | ||||
| AlphaFold | entry | P34616 | ||||
| NCBI_protein | GI_number | GI:919007432 | ||||
| Protein_id | CHROMOSOME_III | CCD62768 | 2 | |||
| DB_remark | CDH-3 protein; contains similarity to Pfam domains PF00028 (Cadherin domain), PF02210 (Laminin G domain); contains similarity to Interpro domains IPR013320 (Concanavalin A-like lectin/glucanase domain superfamily), IPR002126 (Cadherin-like), IPR001791 (Laminin G domain), IPR015919 (Cadherin-like superfamily) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00000395 | ||||
| Corresponding_transcript | ZK112.7.1 | |||||
| Corresponding_protein | CE50490 | |||||
| Corresponding_PCR_product | TH:305G6 | |||||
| cenix:305-g6 | ||||||
| mv_ZK112.7 | ||||||
| sjj_ZK112.7 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA (38) | ||||||
| RNAi_result | WBRNAi00021816 | |||||
| WBRNAi00059125 | ||||||
| WBRNAi00107682 | ||||||
| WBRNAi00005441 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Cadherin-3 | Accession_evidence | UniProt | SP:P34616 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 20 Nov 2014 00:00:00 | WBPerson4025 | ||||
| Remark | [141120 gw3] Removed the 18th intron based on the RNASeq splice data - there was no evidence for it. | Curator_confirmed | WBPerson4025 | |||
| From_analysis | RNASeq | |||||
| Method | curated |
