WormBase Tree Display for CDS: T27B7.5a
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| T27B7.5a | SMap | S_parent | Sequence | T27B7 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 95 | |||
| 146 | 206 | |||||
| 927 | 1117 | |||||
| 1591 | 1858 | |||||
| 1906 | 2013 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | G4SR04 | ||
| UniProt | UniProtAcc | G4SR04 | ||||
| UniProt_GCRP | UniProtAcc | G4SR04 | ||||
| AlphaFold | entry | G4SR04 | ||||
| NCBI_protein | GI_number | GI:1532354286 | ||||
| Protein_id | CHROMOSOME_V | CCD74250 | 2 | |||
| DB_remark | NHR-227 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | GSC | MM454_FPK17YK01C7CS3 | |||
| Visible | Gene | WBGene00020851 | ||||
| Corresponding_transcript | T27B7.5a.1 | |||||
| Corresponding_protein | CE52889 | |||||
| Corresponding_PCR_product | cenix:136-f1 | |||||
| mv_T27B7.5 | ||||||
| sjj_T27B7.5 | ||||||
| Corresponding_oligo_set (14) | ||||||
| Matching_cDNA | YA_Nanopore_Li_42766 | Inferred_automatically | transcript_builder.pl | |||
| OSTVL00020851 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00054277 | |||||
| WBRNAi00091039 | ||||||
| WBRNAi00019311 | ||||||
| Microarray_results (16) | ||||||
| Brief_identification | Nuclear receptor domain-containing protein | Accession_evidence | UniProt | TR:G4SR04 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 02 Oct 2018 16:41:54 | WBPerson4025 | ||||
| Remark | maybe a pseudogene | |||||
| [20081112 tb] Removed multiple 5' exons based on OSTVL00020851. [ | Curator_confirmed | WBPerson1849 | ||||
| [20100128 tb] Added isoform based on unpublished data, GSC accession MM454_FPK17YK01C7CS3 | Curator_confirmed | WBPerson1849 | ||||
| [181002 gw3] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4025 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
