WormBase Tree Display for CDS: T01G6.6b
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| T01G6.6b | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T01G6 | |||
| Structure | Source_exons | 1 | 182 | |||
| 235 | 299 | |||||
| 763 | 1172 | |||||
| 1222 | 1412 | |||||
| 1496 | 1763 | |||||
| 1813 | 1914 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | B1GRK7 | ||
| UniProt | UniProtAcc | B1GRK7 | ||||
| UniProt_GCRP | UniProtAcc | B1GRK7 | ||||
| AlphaFold | entry | B1GRK7 | ||||
| NCBI_protein | GI_number | GI:351064625 | ||||
| Protein_id | CHROMOSOME_V | CCD73126 | 1 | |||
| DB_remark | NHR-212 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | EMBL | EC001749 | |||
| Visible | Gene | WBGene00020153 | ||||
| Corresponding_transcript | T01G6.6b.1 | |||||
| Corresponding_protein | CE42457 | |||||
| Corresponding_PCR_product | cenix:42-e2 | |||||
| mv_T01G6.6 | ||||||
| sjj_T01G6.6 | ||||||
| smd_T01G6.6 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA | L3_Nanopore_Roach_15595 | |||||
| L2_Nanopore_Roach_95141 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_90319 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_2584 | ||||||
| adult_Nanopore_Roach_36906 | ||||||
| EC001749 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_317892 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_89692 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_312465 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00052153 | |||||
| WBRNAi00035028 | ||||||
| WBRNAi00017989 | ||||||
| Microarray_results (20) | ||||||
| Brief_identification | Nuclear Hormone Receptor family | Accession_evidence | UniProt | TR:B1GRK7 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 21 Apr 2015 00:00:00 | WBPerson4025 | ||||
| Method | curated |
