WormBase Tree Display for CDS: C41C4.5h
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| C41C4.5h | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C41C4 | |||
| Structure | Source_exons (14) | |||||
| DB_info | Database | TrEMBL | UniProtAcc | H2FLG0 | ||
| UniProt | UniProtAcc | H2FLG0 | ||||
| AlphaFold | entry | H2FLG0 | ||||
| NCBI_protein | GI_number | GI:371570789 | ||||
| Protein_id | CHROMOSOME_II | CCF23434 | 1 | |||
| DB_remark | UNC-105 protein; contains similarity to Pfam domain PF00858 (Amiloride-sensitive sodium channel); contains similarity to Interpro domains IPR001873 (Epithelial sodium channel), IPR004726 (Degenerin) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform (2) | ||||||
| Visible | Gene | WBGene00006832 | ||||
| Corresponding_transcript | C41C4.5h.1 | |||||
| Corresponding_protein | CE46939 | |||||
| Corresponding_PCR_product | cenix:173-d12 | |||||
| cenix:203-d4 | ||||||
| mv_C41C4.4 | ||||||
| mv_C41C4.5 | ||||||
| sjj_C41C4.5 | ||||||
| Corresponding_oligo_set (24) | ||||||
| Matching_cDNA | L2_Nanopore_Roach_99056 | Inferred_automatically | transcript_builder.pl | |||
| L2_Nanopore_Roach_104077 | ||||||
| EM_Nanopore_Li_322487 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00029717 | |||||
| WBRNAi00011833 | ||||||
| WBRNAi00042279 | ||||||
| WBRNAi00090191 | ||||||
| WBRNAi00109150 | ||||||
| WBRNAi00089804 | ||||||
| WBRNAi00042278 | ||||||
| WBRNAi00090032 | ||||||
| WBRNAi00090350 | ||||||
| Microarray_results (28) | ||||||
| Brief_identification | Degenerin-like protein unc-105 | Accession_evidence | UniProt | TR:H2FLG0 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 06 Dec 2011 00:00:00 | WBPerson1983 | ||||
| Remark | [111206 pad] Generated this representitive transcript that contains an alternate intron towards the 3' end and also a 3' extension into an additional coding exon. | Curator_confirmed | WBPerson1983 | |||
| From_analysis | RNASeq_Hillier_elegans | |||||
| Method | curated |
