WormBase Tree Display for CDS: C28D4.9

C28D4.9 Evidence: Curator_confirmed: WBPerson4025
  SMap: S_parent: Sequence: C28D4
  Structure: Source_exons: 1 34
      454 544
      666 790
      991 1166
      1589 1720
      1826 1936
      1989 2155
      2249 2373
      2421 2575
      2824 2940
  DB_info: Database: TrEMBL UniProtAcc Q95QT4
      UniProt UniProtAcc Q95QT4
      UniProt_GCRP UniProtAcc Q95QT4
      AlphaFold entry Q95QT4
      NCBI_protein GI_number GI:34555893
      TREEFAM TREEFAM_ID TF315528
    Protein_id: CHROMOSOME_IV CAC70072 3
    DB_remark: NHR-138 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily)
  Origin: From_laboratory: HX
    Species: Caenorhabditis elegans
  Properties: Coding: CDS
      Prediction_status: Confirmed
  Visible: Gene: WBGene00003728
    Corresponding_transcript: C28D4.9.1
    Corresponding_protein: CE35413
    Corresponding_PCR_product: cenix:40-a1
      mv_C28D4.1
    Corresponding_oligo_set (11)
    Matching_cDNA (47)
    RNAi_result: WBRNAi00041414
    Microarray_results (11)
    RNASeq_FPKM (74)
    Last_reviewed: 02 Mar 2018 11:22:33 WBPerson4025
    Remark: [180302 gw3] Convert from an isoform to a single CDS.
      [010821 kj] C28D4.1 split into C28D4.1 and C28D4.9 due to EST evidence.
      [tsl] SL1 trans-spliced
      [021126 dl] Modified prediction based on EST data. Added a 5' exon Curator_confirmed: WBPerson1846
      [030827 dl] Removed small penultimate exon because of lack of evidence Curator_confirmed: WBPerson1846
  Associated_feature: WBsf004731
  Method: curated