WormBase Tree Display for Gene: WBGene00003728
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| WBGene00003728 | SMap | S_parent | Sequence | C28D4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nhr-138 | Person_evidence | WBPerson600 | |||||
| Sequence_name | C28D4.9 | ||||||||
| Molecular_name | C28D4.9 | ||||||||
| C28D4.9.1 | |||||||||
| CE35413 | |||||||||
| Other_name | CELE_C28D4.9 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nhr-138 | ||||||||
| DB_info | Database | AceView | gene | 4K495 | |||||
| WormQTL | gene | WBGene00003728 | |||||||
| WormFlux | gene | WBGene00003728 | |||||||
| NDB | locus_tag | CELE_C28D4.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003728|UniProtKB=Q95QT4 | |||||||
| family | PTHR47630 | ||||||||
| NCBI | gene | 3565904 | |||||||
| RefSeq | protein | NM_069329.9 | |||||||
| TREEFAM | TREEFAM_ID | TF315528 | |||||||
| TrEMBL | UniProtAcc | Q95QT4 | |||||||
| UniProt_GCRP | UniProtAcc | Q95QT4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 02 Mar 2018 10:40:20 | WBPerson4025 | Event | Split_into | WBGene00303043 | ||||
| Split_into | WBGene00303043 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (34) | |||||||||
| Strain | WBStrain00036714 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00088597 | ||||||||
| 00088598 | |||||||||
| 00088599 | |||||||||
| 00088600 | |||||||||
| 00111709 | |||||||||
| 00111710 | |||||||||
| 00111711 | |||||||||
| 00111712 | |||||||||
| Contained_in_operon | CEOP4336 | ||||||||
| Ortholog (33) | |||||||||
| Paralog (217) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C28D4.9 | |||||||
| Corresponding_CDS_history | C28D4.9:wp92 | ||||||||
| C28D4.9:wp109 | |||||||||
| C28D4.9a:wp264 | |||||||||
| C28D4.9b:wp264 | |||||||||
| Corresponding_transcript | C28D4.9.1 | ||||||||
| Other_sequence | CJC07132_1 | ||||||||
| Associated_feature | WBsf646249 | ||||||||
| WBsf659800 | |||||||||
| WBsf716577 | |||||||||
| WBsf717174 | |||||||||
| WBsf718161 | |||||||||
| WBsf997466 | |||||||||
| WBsf1017992 | |||||||||
| WBsf228862 | |||||||||
| WBsf228863 | |||||||||
| WBsf228864 | |||||||||
| Transcription_factor | WBTranscriptionFactor000367 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00041414 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00011297 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076172 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025967 | ||||||||
| Expr1031740 | |||||||||
| Expr1145445 | |||||||||
| Expr2014038 | |||||||||
| Expr2032278 | |||||||||
| Drives_construct | WBCnstr00035913 | ||||||||
| Construct_product | WBCnstr00035913 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (81) | |||||||||
| Interaction | WBInteraction000526754 | ||||||||
| WBInteraction000526817 | |||||||||
| WBInteraction000526818 | |||||||||
| WBInteraction000526819 | |||||||||
| WBInteraction000530574 | |||||||||
| WBInteraction000543711 | |||||||||
| Map_info | Map | IV | Position | 4.38835 | Error | 0.000496 | |||
| Positive | Positive_clone | C28D4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00028802 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
