WormBase Tree Display for CDS: R03D7.1
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| R03D7.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | R03D7 | |||
| Structure | Source_exons | 1 | 126 | |||
| 267 | 513 | |||||
| 566 | 658 | |||||
| 800 | 1165 | |||||
| 1215 | 2460 | |||||
| 2506 | 3142 | |||||
| 3195 | 3479 | |||||
| 3523 | 4185 | |||||
| 4234 | 4320 | |||||
| DB_info | Database | KEGG | KEGG_id | 2.1.1.13 | ||
| SwissProt | UniProtAcc | Q09582 | ||||
| UniProt | UniProtAcc | Q09582 | ||||
| UniProt_GCRP | UniProtAcc | Q09582 | ||||
| AlphaFold | entry | Q09582 | ||||
| NCBI_protein | GI_number | GI:3878791 | ||||
| TREEFAM | TREEFAM_ID | TF312829 | ||||
| Protein_id | CHROMOSOME_II | CAA86855 | 1 | |||
| DB_remark | METR-1 protein; contains similarity to Pfam domains PF00809 (Pterin binding enzyme), PF02310 (B12 binding domain), PF02574 (Homocysteine S-methyltransferase), PF02607 (B12 binding domain), PF02965 (Vitamin B12 dependent methionine synthase, activation domain); contains similarity to Interpro domains IPR004223 (Vitamin B12-dependent methionine synthase, activation domain), IPR037010 (Vitamin B12-dependent methionine synthase, activation domain superfamily), IPR003759 (Cobalamin (vitamin B12)-binding module, cap domain), IPR036594 (Methionine synthase domain), IPR011822 (Cobalamin-dependent methionine synthase), IPR036724 (Cobalamin-binding domain superfamily), IPR036589 (Homocysteine-binding domain superfamily), IPR003726 (Homocysteine-binding domain), IPR011005 (Dihydropteroate synthase-like superfamily), IPR006158 (Cobalamin (vitamin B12)-binding domain), IPR000489 (Pterin-binding domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00010988 | ||||
| Corresponding_transcript | R03D7.1.1 | |||||
| Corresponding_protein | CE01609 | |||||
| Corresponding_PCR_product (3) | ||||||
| Corresponding_oligo_set (14) | ||||||
| Matching_cDNA | male_Nanopore_Roach_53510 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_121048 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_129532 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_3641 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_13530 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_31427 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_37869 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_44845 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_101294 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_131059 | ||||||
| L1_Nanopore_Roach_38439 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_3683 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_12809 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_74169 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_12004 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_14453 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_21181 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_8020 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_43955 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_37182 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_52068 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_3517 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_37368 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_31524 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_41200 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_32461 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_27973 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_3584 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_32266 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_36557 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_3926 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_3101 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_31566 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_51247 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_2180 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_81818 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_26849 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_12974 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_83200 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_40483 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_31067 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_32086 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_25024 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_38016 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_47024 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_80141 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_11484 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_75362 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_32962 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_25226 | Inferred_automatically | transcript_builder.pl | ||||
| yk35d3.3 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_211184 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_149582 | Inferred_automatically | transcript_builder.pl | ||||
| yk45d3.3 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR122G7_1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_303966 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_56904 | Inferred_automatically | transcript_builder.pl | ||||
| yk1445b09.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_349967 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_251756 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG7573|c5_g2_i1 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_307919 | Inferred_automatically | transcript_builder.pl | ||||
| yk21d8.3 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_163412 | Inferred_automatically | transcript_builder.pl | ||||
| yk1128d06.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk34b3.3 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_141243 | Inferred_automatically | transcript_builder.pl | ||||
| yk1128d06.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk11g12.3 | Inferred_automatically | transcript_builder.pl | ||||
| FN893043 | Inferred_automatically | transcript_builder.pl | ||||
| yk2d6.3 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_65228 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_242938 | Inferred_automatically | transcript_builder.pl | ||||
| yk16b5.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1013g09.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk25a6.3 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_247810 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_189442 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_33694 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_243900 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF122G7_1 | Inferred_automatically | transcript_builder.pl | ||||
| yk883h05.3 | Inferred_automatically | transcript_builder.pl | ||||
| CK576631 | Inferred_automatically | transcript_builder.pl | ||||
| EC008403 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG7573|c5_g2_i2 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_243677 | Inferred_automatically | transcript_builder.pl | ||||
| CK576639 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_302919 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_3211 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_114364 | Inferred_automatically | transcript_builder.pl | ||||
| yk1155d11.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1585d06.3 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_2659 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_121594 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_318278 | Inferred_automatically | transcript_builder.pl | ||||
| EB993737 | Inferred_automatically | transcript_builder.pl | ||||
| FN893045 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_206633 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_186423 | Inferred_automatically | transcript_builder.pl | ||||
| yk1659f04.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1155d11.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_322055 | Inferred_automatically | transcript_builder.pl | ||||
| yk44b4.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk29b3.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1176e06.5 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_212714 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_220036 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_333180 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_2875 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_323588 | Inferred_automatically | transcript_builder.pl | ||||
| yk1176e06.3 | Inferred_automatically | transcript_builder.pl | ||||
| EC003783 | Inferred_automatically | transcript_builder.pl | ||||
| yk41c4.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk20b9.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1445b09.3 | Inferred_automatically | transcript_builder.pl | ||||
| CEESD56F | Inferred_automatically | transcript_builder.pl | ||||
| yk31e3.3 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_213511 | Inferred_automatically | transcript_builder.pl | ||||
| EC026507 | Inferred_automatically | transcript_builder.pl | ||||
| EC035640 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_236519 | Inferred_automatically | transcript_builder.pl | ||||
| yk33e4.3 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_239996 | Inferred_automatically | transcript_builder.pl | ||||
| yk1598b03.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk7h2.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1654b02.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1585d06.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1659f04.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk33e4.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1013g09.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk41a6.3 | Inferred_automatically | transcript_builder.pl | ||||
| CK576638 | Inferred_automatically | transcript_builder.pl | ||||
| yk1598b03.3 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00071221 | |||||
| WBRNAi00034551 | ||||||
| WBRNAi00090587 | ||||||
| WBRNAi00051170 | ||||||
| WBRNAi00106971 | ||||||
| WBRNAi00017346 | ||||||
| Microarray_results (15) | ||||||
| Brief_identification | Probable methionine synthase | Accession_evidence | UniProt | SP:Q09582 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf003893 | |||||
| Method | curated |
