WormBase Tree Display for Expression_cluster: [cgc5767]:cluster_42
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[cgc5767]:cluster_42 | Description | Early embryonic development gene expression profile. |
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Species | Caenorhabditis elegans | |
Algorithm | QT clustering | |
Reference | WBPaper00005767 | |
Microarray_results | Aff_K08F8.1 | |
Aff_C33E10.2 | ||
Aff_F43D9.5 | ||
Aff_T01G5.7 | ||
Aff_T10H9.3 | ||
Aff_W09G12.9 | ||
Aff_Y39E4B.L | ||
Aff_Y75B12B.2 | ||
Aff_Y75D11A_91.A | ||
Gene | WBGene00010681 | |
WBGene00016346 | ||
WBGene00006395 | ||
WBGene00011342 | ||
WBGene00020425 | ||
WBGene00021123 | ||
WBGene00012716 | ||
WBGene00000883 | ||
WBGene00022292 | ||
Attribute_of | Microarray_experiment (12) | |
Remark | Clusters were generated by the QT clustering algorithm. The algorithm assembles a series of clusters ordered by size, largest first, with no limit on the number of clusters other than the coherence (cluster diameter) defined a priori (0.7 in our clusters). To ensure robust clusters the distance metric used for clustering was 1-Ravg , where Ravg was the average Pearson correlation coefficient between moving average profiles over 20 realizations of the data plus simulated noise. Noise was generated by a two-component model consisting of an additive Gaussian background with standard deviation 2 ppm, and a multiplicative Gaussian sampling error with s.d.=0.1. Simulated data were floored at 1 ppm. | |
Type: Co-expression Cluster |